CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig16187_at

Gene name
Homology with Arabidopsis Similar to At2g27500: glycosyl hydrolase family 17 protein (HF=6e-3)

Module size 6 genes

NF 0.23

%ile 28.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 74.3 0.93 Contig16187_at Contig16187 - - 6e-3 At2g27500 glycosyl hydrolase family 17 protein O.I. H.G. S.X.
0.44 58.9 0.95 Contig15357_at Contig15357 - - 3e-1 At1g24440 protein binding / zinc ion binding O.I. H.G. S.X.
0.22 24.2 0.96 Contig5368_at Contig5368 - - 2e+0 At3g46150 unknown protein O.I. H.G. S.X.
0.20 21.1 0.95 Contig17106_at Contig17106 - - 5e+0 At1g26890 - O.I. H.G. S.X.
0.14 12.9 0.95 Contig18816_at Contig18816 - - 3e+0 At1g71180 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein O.I. H.G. S.X.
0.09 7.4 0.95 Contig6757_at Contig6757 - - 3e-4 At1g72550 tRNA synthetase beta subunit family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	0.93	Contig26571_at	Contig26571	-	-	1e-2	At4g12940	unknown protein	O.I.	H.G.	S.X.
0.50	66.9	0.93	Contig7947_at	Contig7947	-	-	2e-8	At2g01330	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.40	53.1	0.96	Contig5369_at	Contig5369	-	-	1e-1	At3g46150	unknown protein	O.I.	H.G.	S.X.
0.37	47.9	0.89	Contig16347_at	Contig16347	-	-	1e-16	At5g35180	phosphoinositide binding	O.I.	H.G.	S.X.
0.36	47.1	0.94	Contig7545_at	Contig7545	-	-	3e-3	At5g18400	unknown protein	O.I.	H.G.	S.X.
0.36	47.1	0.95	HK04001r_at	HK04001r	-	-	2e+0	At2g17780	MCA2 (mid1-complementing activity 2)	O.I.	H.G.	S.X.
0.35	45.1	0.94	Contig8499_at	Contig8499	-	-	3e-7	At1g03280	transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein	O.I.	H.G.	S.X.
0.33	42.6	0.92	Contig10912_at	Contig10912	-	-	2e-1	At4g28200	-	O.I.	H.G.	S.X.
0.33	42.6	0.93	Contig17955_at	Contig17955	-	-	2e-10	At5g28350	-	O.I.	H.G.	S.X.
0.31	38.6	0.95	Contig17441_at	Contig17441	-	-	3e-1	At2g42300	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.
0.31	38.6	0.95	Contig6469_at	Contig6469	-	-	3e-37	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	O.I.	H.G.	S.X.
0.30	37.0	0.94	Contig8488_at	Contig8488	-	-	9e-6	At1g28490	SYP61 (SYNTAXIN OF PLANTS 61)	O.I.	H.G.	S.X.
0.27	32.1	0.89	Contig3391_at	Contig3391	-	-	1e-28	At5g20940	glycosyl hydrolase family 3 protein	O.I.	H.G.	S.X.
0.25	28.9	0.90	Contig6322_at	Contig6322	-	-	4e-21	At1g76670	transporter-related	O.I.	H.G.	S.X.
0.25	28.9	0.91	Contig1019_at	Contig1019	-	-	2e-79	At2g39730	RCA (RUBISCO ACTIVASE)	O.I.	H.G.	S.X.
0.25	28.9	0.94	Contig5243_at	Contig5243	-	-	2e-2	At1g75550	glycine-rich protein	O.I.	H.G.	S.X.
0.25	28.9	0.94	Contig736_at	Contig736	-	-	3e+0	At5g43513	-	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.8 99.3 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
9.5 99.0 GSM261071 Albina f-17 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.9 98.7 GSM261036 Dicktoo-subzero-rep1 GSE10329 Low temperature stress in cv. Dicktoo
7.3 98.5 GSM261072 Albina f-17 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.3 98.1 GSM261037 Dicktoo-subzero-rep2 GSE10329 Low temperature stress in cv. Dicktoo
5.8 97.8 GSM261038 Dicktoo-subzero-rep3 GSE10329 Low temperature stress in cv. Dicktoo
5.7 97.7 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.1 97.3 GSM261073 Albina f-17 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.6 96.8 GSM372955 genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2 96.3 GSM431546 pathogen isolates: Mock - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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