CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig16187_at

Gene name
Homology with Arabidopsis Similar to At2g27500: glycosyl hydrolase family 17 protein (HF=6e-3)

Module size 6 genes

NF 0.23

%ile 28.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 74.3 0.93 Contig16187_at Contig16187 - - 6e-3 At2g27500 glycosyl hydrolase family 17 protein O.I. H.G. S.X.
0.44 58.9 0.95 Contig15357_at Contig15357 - - 3e-1 At1g24440 protein binding / zinc ion binding O.I. H.G. S.X.
0.22 24.2 0.96 Contig5368_at Contig5368 - - 2e+0 At3g46150 unknown protein O.I. H.G. S.X.
0.20 21.1 0.95 Contig17106_at Contig17106 - - 5e+0 At1g26890 - O.I. H.G. S.X.
0.14 12.9 0.95 Contig18816_at Contig18816 - - 3e+0 At1g71180 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein O.I. H.G. S.X.
0.09 7.4 0.95 Contig6757_at Contig6757 - - 3e-4 At1g72550 tRNA synthetase beta subunit family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.8 99.3 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
9.5 99.0 GSM261071 Albina f-17 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.9 98.7 GSM261036 Dicktoo-subzero-rep1 GSE10329 Low temperature stress in cv. Dicktoo
7.3 98.5 GSM261072 Albina f-17 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.3 98.1 GSM261037 Dicktoo-subzero-rep2 GSE10329 Low temperature stress in cv. Dicktoo
5.8 97.8 GSM261038 Dicktoo-subzero-rep3 GSE10329 Low temperature stress in cv. Dicktoo
5.7 97.7 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.1 97.3 GSM261073 Albina f-17 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.6 96.8 GSM372955 genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2 96.3 GSM431546 pathogen isolates: Mock - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

A co-expression module including the maize gene, Zm.3796.1.A1_at, orthologous to the query gene, Contig16187_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.95 99.6 Zm.3796.1.A1_at At2g27500 Hypothetical protein LOC100192039 - 8e-1 At2g32765 SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5) O.I. H.G. S.X.
0.29 28.1 Zm.17550.1.A1_at At2g27500 hypothetical protein LOC100275288 - 1e+0 At1g56450 PBG1 O.I. H.G. S.X.
0.28 28.1 Zm.452.1.S1_at At2g27500 hypothetical LOC541772 - 6e-6 At4g02030 - O.I. H.G. S.X.
0.21 15.5 Zm.7790.1.A1_at At2g27500 CCT motif family protein - 1e+0 At2g40085 unknown protein O.I. H.G. S.X.
0.17 10.6 Zm.3461.1.A1_at At2g27500 - - 1e-19 At3g13470 chaperonin, putative O.I. H.G. S.X.
0.14 7.7 Zm.2499.1.A1_at At2g27500 NFU3 - 2e+0 At5g49940 NFU2 (NIFU-LIKE PROTEIN 2) O.I. H.G. S.X.
0.11 5.3 Zm.830.1.S1_at At2g27500 - - 5e-1 At1g14150 oxygen evolving enhancer 3 (PsbQ) family protein O.I. H.G. S.X.
0.10 4.6 Zm.5970.1.S1_at At2g27500 hypothetical protein LOC100279250 - 2e-4 At2g05920 subtilase family protein O.I. H.G. S.X.
0.07 2.9 Zm.18496.1.S1_at At2g27500 hypothetical protein LOC100217235 - 2e-1 At5g05100 nucleic acid binding O.I. H.G. S.X.
0.05 1.9 Zm.13112.2.S1_a_at At2g27500 - - 2e-7 At5g63420 emb2746 (embryo defective 2746) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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