Co-expression analysis

Gene ID Contig16187_at
Gene name
Homology with ArabidopsisSimilar to At2g27500: glycosyl hydrolase family 17 protein (HF=6e-3)
Module size 6 genes
NF 0.23
%ile 28.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5674.30.93Contig16187_atContig16187--6e-3At2g27500glycosyl hydrolase family 17 proteinO.I.H.G.S.X.
0.4458.90.95Contig15357_atContig15357--3e-1At1g24440protein binding / zinc ion bindingO.I.H.G.S.X.
0.2224.20.96Contig5368_atContig5368--2e+0At3g46150unknown proteinO.I.H.G.S.X.
0.2021.10.95Contig17106_atContig17106--5e+0At1g26890-O.I.H.G.S.X.
0.1412.90.95Contig18816_atContig18816--3e+0At1g711806-phosphogluconate dehydrogenase NAD-binding domain-containing proteinO.I.H.G.S.X.
0.097.40.95Contig6757_atContig6757--3e-4At1g72550tRNA synthetase beta subunit family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.899.3GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.599.0GSM261071Albina f-17 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
7.998.7GSM261036Dicktoo-subzero-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
7.398.5GSM261072Albina f-17 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
6.398.1GSM261037Dicktoo-subzero-rep2GSE10329Low temperature stress in cv. DicktooLink to GEO
5.897.8GSM261038Dicktoo-subzero-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
5.797.7GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.197.3GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.696.8GSM372955genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.296.3GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1611001_at, orthologous to the query gene, Contig16187_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8394.61611001_atAt2g27500--7e-12At2g26600glycosyl hydrolase family 17 proteinO.I.H.G.S.X.
0.4969.31618962_atAt2g27500hypothetical protein LOC100257791-7e-21At1g34020transporter-relatedO.I.H.G.S.X.
0.4767.71610020_atAt2g27500hypothetical protein LOC100260445-2e-114At2g27450NLP1 (NITRILASE-LIKE PROTEIN 1)O.I.H.G.S.X.
0.3954.91619232_atAt2g27500hypothetical protein LOC100248696-6e-6At3g06420ATG8H (autophagy 8h)O.I.H.G.S.X.
0.3650.71612187_atAt2g27500hypothetical protein LOC100265718-3e-32At3g56490zinc-binding protein, putative / protein kinase C inhibitor, putativeO.I.H.G.S.X.
0.3446.81617016_atAt2g27500hypothetical protein LOC100261969-3e-1At1g04960-O.I.H.G.S.X.
0.3345.71612305_atAt2g27500hypothetical protein LOC100263408-2e-12At3g15660GRX4 (GLUTAREDOXIN 4)O.I.H.G.S.X.
0.3243.11621695_atAt2g27500hypothetical protein LOC100261060-2e-24At1g68070zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3243.11611449_atAt2g27500hypothetical protein LOC100251803-6e-9At5g47710C2 domain-containing proteinO.I.H.G.S.X.
0.3141.31621917_atAt2g27500hypothetical protein LOC100244091-1e-20At3g03420Ku70-binding family proteinO.I.H.G.S.X.
0.3039.41609445_atAt2g27500hypothetical protein LOC100242218-6e-69At4g29160SNF7.1O.I.H.G.S.X.
0.2837.71617450_atAt2g27500urate oxidase-6e-7At2g26230uricase / urate oxidase / nodulin 35, putativeO.I.H.G.S.X.
0.2734.01610819_atAt2g27500hypothetical protein LOC100248631-2e-2At1g53000cytidylyltransferase familyO.I.H.G.S.X.
0.2632.01615588_atAt2g27500hypothetical protein LOC100241835-1e-17At3g62580-O.I.H.G.S.X.
0.2428.71617603_atAt2g27500hypothetical protein LOC100262919-5e-9At5g61970signal recognition particle-related / SRP-relatedO.I.H.G.S.X.
0.2327.51606717_atAt2g27500hypothetical protein LOC100264226-6e-37At1g27530-O.I.H.G.S.X.
0.2124.01619445_s_atAt2g27500hypothetical protein LOC100242075-5e-1At4g32260ATP synthase familyO.I.H.G.S.X.
0.2022.41616871_atAt2g27500hypothetical protein LOC100253007 /// similar to putative dihydrolipoamide succinyltransferase-3e-26At4g269102-oxoacid dehydrogenase family proteinO.I.H.G.S.X.
0.1920.91615418_atAt2g27500hypothetical protein LOC100256204-2e-13At5g02040PRA1.A1 (PRENYLATED RAB ACCEPTOR 1.A1)O.I.H.G.S.X.
0.1819.41618248_atAt2g27500hypothetical protein LOC100250810-1e-19At5g20180ribosomal protein L36 family proteinO.I.H.G.S.X.
0.1718.21611204_s_atAt2g27500hypothetical protein LOC100251977-1e-32At2g29960CYP5 (CYCLOPHILIN 5)O.I.H.G.S.X.
0.1616.71613866_s_atAt2g27500hypothetical protein LOC100245100-2e-68At4g12590unknown proteinO.I.H.G.S.X.
0.1414.41608659_s_atAt2g27500hypothetical protein LOC100258355-7e-43At1g71190SAG18 (SENESCENCE ASSOCIATED GENE 18)O.I.H.G.S.X.
0.1212.11621945_atAt2g27500hypothetical protein LOC100241585-5e+0At3g57860UVI4-LIKE (UV-B-INSENSITIVE 4-LIKE)O.I.H.G.S.X.
0.077.81619316_s_atAt2g27500hypothetical protein LOC100261243-3e-67At2g02760ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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