CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig16187_at

Gene name
Homology with Arabidopsis Similar to At2g27500: glycosyl hydrolase family 17 protein (HF=6e-3)

Module size 6 genes

NF 0.23

%ile 28.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 74.3 0.93 Contig16187_at Contig16187 - - 6e-3 At2g27500 glycosyl hydrolase family 17 protein O.I. H.G. S.X.
0.44 58.9 0.95 Contig15357_at Contig15357 - - 3e-1 At1g24440 protein binding / zinc ion binding O.I. H.G. S.X.
0.22 24.2 0.96 Contig5368_at Contig5368 - - 2e+0 At3g46150 unknown protein O.I. H.G. S.X.
0.20 21.1 0.95 Contig17106_at Contig17106 - - 5e+0 At1g26890 - O.I. H.G. S.X.
0.14 12.9 0.95 Contig18816_at Contig18816 - - 3e+0 At1g71180 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein O.I. H.G. S.X.
0.09 7.4 0.95 Contig6757_at Contig6757 - - 3e-4 At1g72550 tRNA synthetase beta subunit family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.56	74.3	0.93	Contig16187_at	Contig16187	-	-	6e-3	At2g27500	glycosyl hydrolase family 17 protein	O.I.	H.G.	S.X.
0.44	58.9	0.95	Contig15357_at	Contig15357	-	-	3e-1	At1g24440	protein binding / zinc ion binding	O.I.	H.G.	S.X.
0.22	24.2	0.96	Contig5368_at	Contig5368	-	-	2e+0	At3g46150	unknown protein	O.I.	H.G.	S.X.
0.20	21.1	0.95	Contig17106_at	Contig17106	-	-	5e+0	At1g26890	-	O.I.	H.G.	S.X.
0.14	12.9	0.95	Contig18816_at	Contig18816	-	-	3e+0	At1g71180	6-phosphogluconate dehydrogenase NAD-binding domain-containing protein	O.I.	H.G.	S.X.
0.09	7.4	0.95	Contig6757_at	Contig6757	-	-	3e-4	At1g72550	tRNA synthetase beta subunit family protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.8 99.3 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
9.5 99.0 GSM261071 Albina f-17 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.9 98.7 GSM261036 Dicktoo-subzero-rep1 GSE10329 Low temperature stress in cv. Dicktoo
7.3 98.5 GSM261072 Albina f-17 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.3 98.1 GSM261037 Dicktoo-subzero-rep2 GSE10329 Low temperature stress in cv. Dicktoo
5.8 97.8 GSM261038 Dicktoo-subzero-rep3 GSE10329 Low temperature stress in cv. Dicktoo
5.7 97.7 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.1 97.3 GSM261073 Albina f-17 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.6 96.8 GSM372955 genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2 96.3 GSM431546 pathogen isolates: Mock - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
11.8	99.3	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.5	99.0	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.9	98.7	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
7.3	98.5	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.3	98.1	GSM261037	Dicktoo-subzero-rep2	GSE10329	Low temperature stress in cv. Dicktoo
5.8	97.8	GSM261038	Dicktoo-subzero-rep3	GSE10329	Low temperature stress in cv. Dicktoo
5.7	97.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.6	96.8	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2	96.3	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.37866.1.A1_s_at, orthologous to the query gene, Contig16187_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.76 94.3 PtpAffx.37866.1.A1_s_at At2g27500 hypothetical protein - 1e-1 At4g34480 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds O.I. H.G. S.X.
0.45 72.3 PtpAffx.24700.1.A1_at At2g27500 hypothetical protein - 8e-2 At4g13940 MEE58 (MATERNAL EFFECT EMBRYO ARREST 58) O.I. H.G. S.X.
0.44 71.9 PtpAffx.107969.2.A1_at At2g27500 - - 2e-2 At5g66680 DGL1 O.I. H.G. S.X.
0.44 71.9 PtpAffx.217755.1.S1_at At2g27500 hypothetical protein - 6e+0 At2g06530 VPS2.1 O.I. H.G. S.X.
0.41 67.7 PtpAffx.220012.1.S1_at At2g27500 hypothetical protein - 7e-1 At3g50200 unknown protein O.I. H.G. S.X.
0.36 61.6 PtpAffx.219071.1.S1_at At2g27500 hypothetical protein - 2e-34 Atcg00350 - O.I. H.G. S.X.
0.33 57.5 PtpAffx.209926.1.S1_at At2g27500 hypothetical protein - 5e-7 At1g78680 ATGGH2 (gamma-glutamyl hydrolase 2) O.I. H.G. S.X.
0.31 53.7 PtpAffx.26558.3.S1_s_at At2g27500 hypothetical protein - 4e-1 At3g26380 glycosyl hydrolase family protein 27 / alpha-galactosidase family protein / melibiase family protein O.I. H.G. S.X.
0.29 50.5 PtpAffx.213158.1.S1_at At2g27500 - - 1e-1 At4g28320 glycosyl hydrolase family 5 protein / cellulase family protein O.I. H.G. S.X.
0.29 50.5 PtpAffx.214558.1.S1_at At2g27500 hypothetical protein - 2e-1 At1g11500 unknown protein O.I. H.G. S.X.
0.23 40.5 PtpAffx.221050.1.S1_x_at At2g27500 - - 1e-1 At4g27590 copper-binding protein-related O.I. H.G. S.X.
0.23 40.5 PtpAffx.210290.1.S1_at At2g27500 hypothetical protein - 2e-7 At5g24318 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds O.I. H.G. S.X.
0.23 40.5 PtpAffx.145046.1.A1_at At2g27500 hypothetical protein - 4e+0 At4g35025 unknown protein O.I. H.G. S.X.
0.22 38.3 PtpAffx.114566.1.A1_at At2g27500 hypothetical protein - 2e-1 At2g17710 unknown protein O.I. H.G. S.X.
0.20 34.6 PtpAffx.7042.1.S1_at At2g27500 - - 2e+0 At5g40382 cytochrome-c oxidase O.I. H.G. S.X.
0.20 34.6 PtpAffx.203818.1.S1_x_at At2g27500 hypothetical protein - 3e-2 At1g12520 ATCCS (COPPER CHAPERONE FOR SOD1) O.I. H.G. S.X.
0.19 32.7 PtpAffx.213729.1.S1_at At2g27500 hypothetical protein - 5e+0 At4g29033 - O.I. H.G. S.X.
0.19 32.7 PtpAffx.224879.1.S1_x_at At2g27500 hypothetical protein - 5e-65 At4g01810 protein transport protein-related O.I. H.G. S.X.
0.15 25.3 PtpAffx.210846.1.S1_at At2g27500 hypothetical protein - 2e-4 At1g09280 - O.I. H.G. S.X.
0.14 23.5 PtpAffx.205970.1.S1_at At2g27500 hypothetical protein - 8e-1 At5g09750 HEC3 (HECATE 3) O.I. H.G. S.X.
0.13 21.6 PtpAffx.81831.1.S1_at At2g27500 hypothetical protein - 3e-2 At5g37055 SEF (SERRATED LEAVES AND EARLY FLOWERING) O.I. H.G. S.X.
0.13 21.6 PtpAffx.5021.1.S1_at At2g27500 hypothetical protein - 1e-4 At1g54360 TAF6B4 (TBP-ASSOCIATED FACTOR 6B4) O.I. H.G. S.X.
0.13 21.6 Ptp.4580.1.S1_at At2g27500 hypothetical protein - 1e-1 At4g17060 unknown protein O.I. H.G. S.X.
0.10 16.3 PtpAffx.10664.1.S1_at At2g27500 hypothetical protein - 3e-86 At2g43790 ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.76	94.3	PtpAffx.37866.1.A1_s_at	At2g27500	hypothetical protein	-	1e-1	At4g34480	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	O.I.	H.G.	S.X.
0.45	72.3	PtpAffx.24700.1.A1_at	At2g27500	hypothetical protein	-	8e-2	At4g13940	MEE58 (MATERNAL EFFECT EMBRYO ARREST 58)	O.I.	H.G.	S.X.
0.44	71.9	PtpAffx.107969.2.A1_at	At2g27500	-	-	2e-2	At5g66680	DGL1	O.I.	H.G.	S.X.
0.44	71.9	PtpAffx.217755.1.S1_at	At2g27500	hypothetical protein	-	6e+0	At2g06530	VPS2.1	O.I.	H.G.	S.X.
0.41	67.7	PtpAffx.220012.1.S1_at	At2g27500	hypothetical protein	-	7e-1	At3g50200	unknown protein	O.I.	H.G.	S.X.
0.36	61.6	PtpAffx.219071.1.S1_at	At2g27500	hypothetical protein	-	2e-34	Atcg00350	-	O.I.	H.G.	S.X.
0.33	57.5	PtpAffx.209926.1.S1_at	At2g27500	hypothetical protein	-	5e-7	At1g78680	ATGGH2 (gamma-glutamyl hydrolase 2)	O.I.	H.G.	S.X.
0.31	53.7	PtpAffx.26558.3.S1_s_at	At2g27500	hypothetical protein	-	4e-1	At3g26380	glycosyl hydrolase family protein 27 / alpha-galactosidase family protein / melibiase family protein	O.I.	H.G.	S.X.
0.29	50.5	PtpAffx.213158.1.S1_at	At2g27500	-	-	1e-1	At4g28320	glycosyl hydrolase family 5 protein / cellulase family protein	O.I.	H.G.	S.X.
0.29	50.5	PtpAffx.214558.1.S1_at	At2g27500	hypothetical protein	-	2e-1	At1g11500	unknown protein	O.I.	H.G.	S.X.
0.23	40.5	PtpAffx.221050.1.S1_x_at	At2g27500	-	-	1e-1	At4g27590	copper-binding protein-related	O.I.	H.G.	S.X.
0.23	40.5	PtpAffx.210290.1.S1_at	At2g27500	hypothetical protein	-	2e-7	At5g24318	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	O.I.	H.G.	S.X.
0.23	40.5	PtpAffx.145046.1.A1_at	At2g27500	hypothetical protein	-	4e+0	At4g35025	unknown protein	O.I.	H.G.	S.X.
0.22	38.3	PtpAffx.114566.1.A1_at	At2g27500	hypothetical protein	-	2e-1	At2g17710	unknown protein	O.I.	H.G.	S.X.
0.20	34.6	PtpAffx.7042.1.S1_at	At2g27500	-	-	2e+0	At5g40382	cytochrome-c oxidase	O.I.	H.G.	S.X.
0.20	34.6	PtpAffx.203818.1.S1_x_at	At2g27500	hypothetical protein	-	3e-2	At1g12520	ATCCS (COPPER CHAPERONE FOR SOD1)	O.I.	H.G.	S.X.
0.19	32.7	PtpAffx.213729.1.S1_at	At2g27500	hypothetical protein	-	5e+0	At4g29033	-	O.I.	H.G.	S.X.
0.19	32.7	PtpAffx.224879.1.S1_x_at	At2g27500	hypothetical protein	-	5e-65	At4g01810	protein transport protein-related	O.I.	H.G.	S.X.
0.15	25.3	PtpAffx.210846.1.S1_at	At2g27500	hypothetical protein	-	2e-4	At1g09280	-	O.I.	H.G.	S.X.
0.14	23.5	PtpAffx.205970.1.S1_at	At2g27500	hypothetical protein	-	8e-1	At5g09750	HEC3 (HECATE 3)	O.I.	H.G.	S.X.
0.13	21.6	PtpAffx.81831.1.S1_at	At2g27500	hypothetical protein	-	3e-2	At5g37055	SEF (SERRATED LEAVES AND EARLY FLOWERING)	O.I.	H.G.	S.X.
0.13	21.6	PtpAffx.5021.1.S1_at	At2g27500	hypothetical protein	-	1e-4	At1g54360	TAF6B4 (TBP-ASSOCIATED FACTOR 6B4)	O.I.	H.G.	S.X.
0.13	21.6	Ptp.4580.1.S1_at	At2g27500	hypothetical protein	-	1e-1	At4g17060	unknown protein	O.I.	H.G.	S.X.
0.10	16.3	PtpAffx.10664.1.S1_at	At2g27500	hypothetical protein	-	3e-86	At2g43790	ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Contig16187_at
Gene name
Homology with Arabidopsis	Similar to At2g27500: glycosyl hydrolase family 17 protein (HF=6e-3)
Module size	6 genes
NF	0.23
%ile	28.3

Co-expression analysis

Gene ID Contig16187_at Gene name Homology with ArabidopsisSimilar to At2g27500: glycosyl hydrolase family 17 protein (HF=6e-3) Module size 6 genes NF 0.23 %ile 28.3

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Contig16187_at

Gene name
Homology with Arabidopsis Similar to At2g27500: glycosyl hydrolase family 17 protein (HF=6e-3)

Module size 6 genes

NF 0.23

%ile 28.3

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays