CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig16187_at

Gene name
Homology with Arabidopsis Similar to At2g27500: glycosyl hydrolase family 17 protein (HF=6e-3)

Module size 6 genes

NF 0.23

%ile 28.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 74.3 0.93 Contig16187_at Contig16187 - - 6e-3 At2g27500 glycosyl hydrolase family 17 protein O.I. H.G. S.X.
0.44 58.9 0.95 Contig15357_at Contig15357 - - 3e-1 At1g24440 protein binding / zinc ion binding O.I. H.G. S.X.
0.22 24.2 0.96 Contig5368_at Contig5368 - - 2e+0 At3g46150 unknown protein O.I. H.G. S.X.
0.20 21.1 0.95 Contig17106_at Contig17106 - - 5e+0 At1g26890 - O.I. H.G. S.X.
0.14 12.9 0.95 Contig18816_at Contig18816 - - 3e+0 At1g71180 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein O.I. H.G. S.X.
0.09 7.4 0.95 Contig6757_at Contig6757 - - 3e-4 At1g72550 tRNA synthetase beta subunit family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.8 99.3 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
9.5 99.0 GSM261071 Albina f-17 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.9 98.7 GSM261036 Dicktoo-subzero-rep1 GSE10329 Low temperature stress in cv. Dicktoo
7.3 98.5 GSM261072 Albina f-17 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.3 98.1 GSM261037 Dicktoo-subzero-rep2 GSE10329 Low temperature stress in cv. Dicktoo
5.8 97.8 GSM261038 Dicktoo-subzero-rep3 GSE10329 Low temperature stress in cv. Dicktoo
5.7 97.7 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.1 97.3 GSM261073 Albina f-17 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.6 96.8 GSM372955 genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2 96.3 GSM431546 pathogen isolates: Mock - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

A co-expression module including the rice gene, Os06g0607000, orthologous to the query gene, Contig16187_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.7 Os06g0607000 At2g27500 - Beta-1,3-glucanase-like protein 1e-3 At2g26600 glycosyl hydrolase family 17 protein O.I. H.G. S.X.
0.38 46.9 Os08g0129700 At2g27500 - NAD-dependent epimerase/dehydratase family protein 7e-14 At1g30620 MUR4 (MURUS 4) O.I. H.G. S.X.
0.35 41.7 Os02g0590800 At2g27500 - Protein kinase domain containing protein 1e-12 At3g20860 ATNEK5 (NIMA-RELATED KINASE5) O.I. H.G. S.X.
0.27 27.5 Os02g0518100 At2g27500 - Protein of unknown function DUF803 family protein 5e-21 At3g26670 - O.I. H.G. S.X.
0.07 3.7 Os02g0729700 At2g27500 - Leucine zipper, homeobox-associated domaincontaining protein 4e-2 At5g66700 HB53 O.I. H.G. S.X.
0.05 2.5 Os07g0501900 At2g27500 - Zn-finger, RING domain containing protein 4e-19 At4g28370 protein binding / zinc ion binding O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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