Co-expression analysis

Gene ID	Contig16187_at
Gene name
Homology with Arabidopsis	Similar to At2g27500: glycosyl hydrolase family 17 protein (HF=6e-3)
Module size	6 genes
NF	0.23
%ile	28.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.3	0.93	Contig16187_at	Contig16187	-	-	6e-3	At2g27500	glycosyl hydrolase family 17 protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.95	Contig15357_at	Contig15357	-	-	3e-1	At1g24440	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.96	Contig5368_at	Contig5368	-	-	2e+0	At3g46150	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig17106_at	Contig17106	-	-	5e+0	At1g26890	-	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.95	Contig18816_at	Contig18816	-	-	3e+0	At1g71180	6-phosphogluconate dehydrogenase NAD-binding domain-containing protein	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.95	Contig6757_at	Contig6757	-	-	3e-4	At1g72550	tRNA synthetase beta subunit family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.8	99.3	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.5	99.0	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.9	98.7	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
7.3	98.5	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.3	98.1	GSM261037	Dicktoo-subzero-rep2	GSE10329	Low temperature stress in cv. Dicktoo
5.8	97.8	GSM261038	Dicktoo-subzero-rep3	GSE10329	Low temperature stress in cv. Dicktoo
5.7	97.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.6	96.8	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2	96.3	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.50651.1.A1_at, orthologous to the query gene, Contig16187_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	93.0	GmaAffx.50651.1.A1_at	At2g27500	-	-	3e+0	At3g56190	ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.90	93.7	GmaAffx.15803.1.S1_at	At2g27500	-	-	2e-1	At3g48660	unknown protein	O.I.	H.G.	S.X.	Please select
0.89	93.5	GmaAffx.28001.1.S1_at	At2g27500	-	-	3e+0	At3g12370	ribosomal protein L10 family protein	O.I.	H.G.	S.X.	Please select
0.89	93.5	GmaAffx.37697.1.S1_at	At2g27500	-	-	4e+0	At4g09970	unknown protein	O.I.	H.G.	S.X.	Please select
0.88	93.4	Gma.13204.1.S1_at	At2g27500	-	-	2e-8	At1g29520	AWPM-19-like membrane family protein	O.I.	H.G.	S.X.	Please select
0.88	93.4	GmaAffx.62093.1.A1_at	At2g27500	-	-	6e-1	At3g54180	CDKB1	O.I.	H.G.	S.X.	Please select
0.87	93.2	Gma.3400.1.S1_at	At2g27500	-	-	2e+0	At2g17130	IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2)	O.I.	H.G.	S.X.	Please select
0.87	93.2	GmaAffx.48977.1.S1_at	At2g27500	-	-	8e-2	At4g12280	copper amine oxidase family protein	O.I.	H.G.	S.X.	Please select
0.87	93.2	GmaAffx.50632.1.A1_at	At2g27500	-	-	2e-1	At5g43330	malate dehydrogenase, cytosolic, putative	O.I.	H.G.	S.X.	Please select
0.87	93.2	GmaAffx.10323.1.S1_at	At2g27500	-	-	1e+0	At2g30200	[acyl-carrier-protein] S-malonyltransferase/ binding / catalytic/ transferase	O.I.	H.G.	S.X.	Please select
0.87	93.2	GmaAffx.44716.1.A1_at	At2g27500	-	-	7e-1	At4g35970	APX5 (ASCORBATE PEROXIDASE 5)	O.I.	H.G.	S.X.	Please select
0.86	93.0	Gma.3997.1.S1_at	At2g27500	-	-	2e+0	At5g44100	ckl7 (Casein Kinase I-like 7)	O.I.	H.G.	S.X.	Please select
0.86	93.0	GmaAffx.66982.1.S1_at	At2g27500	-	-	2e-1	At1g08220	-	O.I.	H.G.	S.X.	Please select
0.85	92.8	Gma.5789.1.S1_at	At2g27500	-	-	5e-4	At3g20570	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.85	92.8	Gma.13980.1.S1_at	At2g27500	-	-	2e+0	At3g49744	unknown protein	O.I.	H.G.	S.X.	Please select
0.83	92.5	GmaAffx.73021.1.S1_at	At2g27500	-	-	2e-5	At4g35970	APX5 (ASCORBATE PEROXIDASE 5)	O.I.	H.G.	S.X.	Please select
0.82	91.9	Gma.13204.2.A1_at	At2g27500	-	-	8e-1	At3g57270	BG1 (BETA-1,3-GLUCANASE 1)	O.I.	H.G.	S.X.	Please select
0.82	91.9	GmaAffx.27927.1.S1_at	At2g27500	-	-	8e-1	At5g19550	ASP2 (ASPARTATE AMINOTRANSFERASE 2)	O.I.	H.G.	S.X.	Please select
0.81	91.7	GmaAffx.63553.1.S1_at	At2g27500	-	-	4e-3	At1g14730	-	O.I.	H.G.	S.X.	Please select
0.78	90.6	GmaAffx.43774.1.A1_at	At2g27500	-	-	2e-7	At3g05620	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.78	90.6	Gma.17136.1.S1_s_at	At2g27500	-	-	6e-1	At1g34270	exostosin family protein	O.I.	H.G.	S.X.	Please select
0.75	89.5	Gma.5253.1.A1_at	At2g27500	-	-	6e-3	At1g55840	SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein	O.I.	H.G.	S.X.	Please select
0.73	88.9	GmaAffx.8378.1.A1_at	At2g27500	-	-	7e-2	At5g40860	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	88.9	Gma.5256.1.A1_at	At2g27500	-	-	3e+0	At3g23165	LCR42 (Low-molecular-weight cysteine-rich 42)	O.I.	H.G.	S.X.	Please select
0.68	86.4	GmaAffx.49959.1.S1_at	At2g27500	-	-	1e+0	At4g12760	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	GmaAffx.77506.1.S1_at	At2g27500	-	-	8e-1	At5g05270	chalcone-flavanone isomerase family protein	O.I.	H.G.	S.X.	Please select
0.65	83.8	GmaAffx.61272.1.S1_at	At2g27500	-	-	1e-2	At4g26130	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage