Co-expression analysis

Gene ID Contig16141_at
Gene name
Homology with ArabidopsisSimilar to At5g08480: VQ motif-containing protein (HF=1e+0)
Module size 7 genes
NF 0.29
%ile 38.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.95Contig16141_atContig16141--1e+0At5g08480VQ motif-containing proteinO.I.H.G.S.X.
0.4053.10.95Contig14153_s_atContig14153--1e-14At1g20575dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putativeO.I.H.G.S.X.
0.3545.10.95Contig9660_atContig9660--1e-1At4g24750-O.I.H.G.S.X.
0.2528.90.95Contig367_s_atContig367--1e-11At5g0245060S ribosomal protein L36 (RPL36C)O.I.H.G.S.X.
0.2326.10.96Contig14868_atContig14868--1e+0At2g35700ERF38 (ERF FAMILY PROTEIN 38)O.I.H.G.S.X.
0.2224.20.95Contig19553_atContig19553--1e-1At1g06160ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59)O.I.H.G.S.X.
0.1716.90.95Contig12806_atContig12806--3e-30At1g50030TOR (TARGET OF RAPAMYCIN)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.397.4GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO
5.297.4GSM282029Malting_day1_Merit_rep3GSE11200Expression data from malting barley seedsLink to GEO
4.596.7GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.596.7GSM238438Embryo 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM431547pathogen isolates: Mock - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.294.3GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.294.3GSM1608317% SWC rep1GSE6990Barley drought stressLink to GEO
3.194.1GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO
3.194.1GSM238439Embryo 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.792.7GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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