Co-expression analysis

Gene ID	Contig16086_at
Gene name
Homology with Arabidopsis	Similar to At4g39720: VQ motif-containing protein (HF=6e-3)
Module size	12 genes
NF	0.28
%ile	36.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.7	0.93	Contig16086_at	Contig16086	-	-	6e-3	At4g39720	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.94	EBpi01_SQ004_K18_at	EBpi01_SQ004_K18	-	-	3e+0	At5g35525	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.95	Contig8975_at	Contig8975	-	-	2e-23	At4g36080	FAT domain-containing protein / phosphatidylinositol 3- and 4-kinase family protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.94	Contig9080_s_at	Contig9080	-	-	5e-14	At1g50140	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.94	rbags22c23_at	rbags22c23	-	-	5e+0	Atmg00600	-	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.94	Contig10617_at	Contig10617	-	-	6e-2	At5g66490	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.95	Contig11784_at	Contig11784	-	-	3e+0	At4g31441	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.94	Contig15798_at	Contig15798	-	-	7e+0	Atcg00730	-	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.94	Contig1517_at	Contig1517	-	-	2e-2	At5g39120	germin-like protein, putative	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.95	Contig10818_at	Contig10818	-	-	1e-2	At1g47970	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.94	Contig22133_at	Contig22133	-	-	6e+0	At5g48760	60S ribosomal protein L13A (RPL13aD)	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.94	Contig3332_at	Contig3332	-	-	2e-1	At3g21215	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.8	97.8	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
5.4	97.5	GSM372939	genotype: Mla6 - pathogen isolates: 5874 - time: 0 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.0	96.0	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.7	95.5	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM372958	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.5	95.1	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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