Co-expression analysis

Gene ID	Contig16052_at
Gene name
Homology with Arabidopsis	Similar to At3g01322: - (HF=2e+0)
Module size	24 genes
NF	0.43
%ile	60.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	94.3	0.71	Contig16052_at	Contig16052	-	-	2e+0	At3g01322	-	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.76	HVSMEf0009B18r2_s_at	HVSMEf0009B18r2	-	-	4e-3	At1g32410	vacuolar protein sorting 55 family protein / VPS55 family protein	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.78	Contig17252_at	Contig17252	-	-	1e+0	At3g20310	ERF7 (ETHYLINE RESPONSE FACTOR 7)	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.76	HVSMEb0003K10r2_x_at	HVSMEb0003K10r2	-	-	2e-2	At2g29870	major intrinsic family protein / MIP family protein	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.79	Contig17010_at	Contig17010	-	-	1e-7	At2g27880	AGO5 (ARGONAUTE 5)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.79	Contig19407_at	Contig19407	-	-	5e-1	At1g32580	plastid developmental protein DAG, putative	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.84	Contig15685_at	Contig15685	-	-	7e-1	At1g23780	F-box family protein	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.85	HVSMEl0014B21r2_at	HVSMEl0014B21r2	-	-	3e+0	At4g20220	-	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.82	Contig17181_at	Contig17181	-	-	6e-4	At5g39590	-	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.76	Contig22030_at	Contig22030	-	-	1e+0	At2g31150	ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.79	Contig10630_at	Contig10630	-	-	6e-6	At3g09090	DEX1 (DEFECTIVE IN EXINE FORMATION 1)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.81	Contig7504_at	Contig7504	-	-	1e+0	At1g52825	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.80	Contig24065_at	Contig24065	-	-	5e+0	At2g42530	COR15B (COLD REGULATED 15B)	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.79	Contig956_x_at	Contig956	-	-	2e-2	At5g02380	MT2B (METALLOTHIONEIN 2B)	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.75	HS06C04u_s_at	HS06C04u	-	-	8e-1	At2g47690	NADH-ubiquinone oxidoreductase-related	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.80	Contig19503_at	Contig19503	-	-	7e-1	At1g61930	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.79	Contig7115_at	Contig7115	-	-	9e-1	At5g51100	FSD2 (FE SUPEROXIDE DISMUTASE 2)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.80	Contig8149_at	Contig8149	-	-	6e+0	At4g14225	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.74	Contig16332_at	Contig16332	-	-	3e-1	At5g41560	-	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.80	S0000200065C10F1_at	S0000200065C10F1	-	-	2e+0	At2g44700	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.81	Contig17246_at	Contig17246	-	-	5e-3	At1g06850	AtbZIP52 (Arabidopsis thaliana basic leucine zipper 52)	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.79	EBem10_SQ001_I24_s_at	EBem10_SQ001_I24	-	-	2e+1	At4g05494	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.77	Contig5949_s_at	Contig5949	-	-	2e+0	At4g14530	-	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.76	Contig14437_at	Contig14437	-	-	1e+0	At4g19640	ARA7	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.6	98.8	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
7.7	98.6	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.1	98.4	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.7	98.3	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.2	97.4	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.0	96.0	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.9	95.8	GSM398252	Martin_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.5	95.1	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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