Co-expression analysis

Gene ID Contig16016_at
Gene name
Homology with ArabidopsisSimilar to At1g59710: - (HF=2e+0)
Module size 7 genes
NF 0.29
%ile 38.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7187.10.94Contig16016_atContig16016--2e+0At1g59710-O.I.H.G.S.X.
0.6784.70.94Contig8013_atContig8013--4e-12At1g54390PHD finger protein-relatedO.I.H.G.S.X.
0.6077.30.95baak1e23_atbaak1e23--4e+0At4g29103unknown proteinO.I.H.G.S.X.
0.4053.10.95Contig19732_atContig19732--1e+0At5g30490-O.I.H.G.S.X.
0.2427.20.94Contig17645_atContig17645--2e+0At3g56810unknown proteinO.I.H.G.S.X.
0.2224.20.94HU02F20u_atHU02F20u--2e-5At3g08690UBC11 (UBIQUITIN-CONJUGATING ENZYME 11)O.I.H.G.S.X.
0.097.40.94HV_CEb0021G08r2_atHV_CEb0021G08r2--2e-2At4g04510protein kinase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.199.5GSM215728gibberellin treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
13.899.5GSM215731gibberellin treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
10.999.2GSM261052Bonus Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
7.398.5GSM238426Endosperm 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.597.6GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.297.4GSM282022Malting_day4_Merit_rep4GSE11200Expression data from malting barley seedsLink to GEO
4.897.0GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.596.7GSM282028Malting_day1_Merit_rep1GSE11200Expression data from malting barley seedsLink to GEO
4.596.7GSM282032Malting_day1_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
4.396.4GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage