Co-expression analysis

Gene ID	Contig16012_at
Gene name
Homology with Arabidopsis	Similar to At3g57490: 40S ribosomal protein S2 (RPS2D) (HF=3e+0)
Module size	6 genes
NF	0.66
%ile	88.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.98	Contig16012_at	Contig16012	-	-	3e+0	At3g57490	40S ribosomal protein S2 (RPS2D)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.98	Contig23530_s_at	Contig23530	-	-	8e+0	At3g57072	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.98	Contig14763_at	Contig14763	-	-	2e-1	At2g37510	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.98	Contig20949_at	Contig20949	-	-	2e+0	At4g34150	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.99	HY09M22u_s_at	HY09M22u	-	-	3e+0	At2g04378	beta-galactosidase	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.98	Contig14735_at	Contig14735	-	-	6e-6	At1g12470	Pep3/Vps18/deep orange family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.8	99.2	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
9.1	98.9	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
6.4	98.1	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.1	97.3	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
4.9	97.1	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.6	96.8	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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