Co-expression analysis

Gene ID	Contig1600_s_at
Gene name
Homology with Arabidopsis	Similar to At3g16780: 60S ribosomal protein L19 (RPL19B) (HF=1e-50)
Module size	11 genes
NF	0.31
%ile	40.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.94	Contig1600_s_at	Contig1600	-	-	1e-50	At3g16780	60S ribosomal protein L19 (RPL19B)	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.95	Contig14361_at	Contig14361	-	-	2e-1	At2g11005	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.95	Contig17556_at	Contig17556	-	-	8e+0	At5g53940	yippee family protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.95	Contig7798_at	Contig7798	-	-	7e-13	At4g31550	WRKY11	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	Contig9027_at	Contig9027	-	-	1e+1	At4g09830	-	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.95	Contig13467_at	Contig13467	-	-	5e-10	At1g77180	chromatin protein family	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.95	Contig16307_at	Contig16307	-	-	9e-2	At5g38450	CYP735A1	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.95	Contig10937_at	Contig10937	-	-	3e-10	At1g20490	AMP-dependent synthetase and ligase family protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.95	Contig16412_at	Contig16412	-	-	1e-13	At1g68100	IAR1 (IAA-ALANINE RESISTANT 1)	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.95	Contig14213_at	Contig14213	-	-	2e-7	At5g47730	SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.95	Contig21935_at	Contig21935	-	-	1e+0	At3g49700	ACS9 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 9)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.0	99.1	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.4	98.8	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.1	96.2	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.7	95.5	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.5	95.1	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9	93.4	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.9	93.4	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.8	93.1	GSM431551	pathogen isolates: Polymyxa graminis - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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