Co-expression analysis

Gene ID	Contig159_at
Gene name
Homology with Arabidopsis	Similar to At5g59690: histone H4 (HF=8e-17)
Module size	6 genes
NF	0.07
%ile	9.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.47	62.2	0.88	Contig159_at	Contig159	-	-	8e-17	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.91	Contig2804_x_at	Contig2804	-	-	3e-1	At1g21550	calcium-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.89	Contig6204_at	Contig6204	-	-	4e-2	At3g59845	NADP-dependent oxidoreductase, putative	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.91	Contig6770_at	Contig6770	-	-	4e+0	At5g08055	-	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.91	Contig2789_at	Contig2789	-	-	5e-1	At1g75040	PR5 (PATHOGENESIS-RELATED GENE 5)	O.I.	H.G.	S.X.	Please select
0.02	1.8	0.90	Contig10869_s_at	Contig10869	-	-	6e+0	At5g62300	40S ribosomal protein S20 (RPS20C)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.8	99.6	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.1	98.0	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.9	97.9	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.3	96.4	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM146369	Golden Promise shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.9	95.8	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
3.8	95.7	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.8	95.7	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.7	95.5	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage