Co-expression analysis

Gene ID Contig15990_at
Gene name
Homology with ArabidopsisSimilar to At2g14910: unknown protein (HF=7e+0)
Module size 6 genes
NF 0.63
%ile 85.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.97Contig15990_atContig15990--7e+0At2g14910unknown proteinO.I.H.G.S.X.
0.7187.10.94Contig15087_atContig15087--8e-3At5g14390-O.I.H.G.S.X.
0.5572.00.96Contig2704_s_atContig2704--9e-1At5g47175LCR3 (Low-molecular-weight cysteine-rich 3)O.I.H.G.S.X.
0.5369.70.93Contig17040_atContig17040--2e-2At3g60490AP2 domain-containing transcription factor TINY, putativeO.I.H.G.S.X.
0.5066.90.96EBed02_SQ002_A05_atEBed02_SQ002_A05--1e+1At5g67400peroxidase 73 (PER73) (P73) (PRXR11)O.I.H.G.S.X.
0.4661.00.93EBpi07_SQ002_E06_atEBpi07_SQ002_E06--2e+0At1g44835YbaK/prolyl-tRNA synthetase family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
48.399.9GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
14.899.5GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.997.9GSM398262HS41-1_0d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.897.0GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
4.196.2GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.995.8GSM238438Embryo 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.995.8GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.995.8GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.394.6GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.394.6GSM261078Albina e-16 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.10110.1.A1_at, orthologous to the query gene, Contig15990_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6785.8Zm.10110.1.A1_atAt2g14910--2e+0At5g58470TAF15b (TBP-ASSOCIATED FACTOR 15b)O.I.H.G.S.X.
0.8395.6Zm.18401.1.A1_atAt2g14910--2e+0At4g14430IBR10 (INDOLE-3-BUTYRIC ACID RESPONSE 10)O.I.H.G.S.X.
0.6381.1Zm.9297.1.A1_atAt2g14910hypothetical protein LOC100275777-1e+0At1g47770beta-galactosidaseO.I.H.G.S.X.
0.5065.7Zm.19016.1.S1_atAt2g14910--3e+0At3g52550-O.I.H.G.S.X.
0.4352.8Zm.6502.1.A1_atAt2g14910ras-related protein RIC2-1e-35At4g18800ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D)O.I.H.G.S.X.
0.2928.1ZmAffx.1089.1.S1_atAt2g14910--3e+0At2g43080AT-P4H-1 (A. THALIANA P4H ISOFORM 1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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