Co-expression analysis

Gene ID	Contig15990_at
Gene name
Homology with Arabidopsis	Similar to At2g14910: unknown protein (HF=7e+0)
Module size	6 genes
NF	0.63
%ile	85.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.97	Contig15990_at	Contig15990	-	-	7e+0	At2g14910	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.94	Contig15087_at	Contig15087	-	-	8e-3	At5g14390	-	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.96	Contig2704_s_at	Contig2704	-	-	9e-1	At5g47175	LCR3 (Low-molecular-weight cysteine-rich 3)	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.93	Contig17040_at	Contig17040	-	-	2e-2	At3g60490	AP2 domain-containing transcription factor TINY, putative	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	EBed02_SQ002_A05_at	EBed02_SQ002_A05	-	-	1e+1	At5g67400	peroxidase 73 (PER73) (P73) (PRXR11)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.93	EBpi07_SQ002_E06_at	EBpi07_SQ002_E06	-	-	2e+0	At1g44835	YbaK/prolyl-tRNA synthetase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
48.3	99.9	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
14.8	99.5	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM398262	HS41-1_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.8	97.0	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.1	96.2	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9	95.8	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.9	95.8	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.3	94.6	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.3	94.6	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the grape gene, 1611210_at, orthologous to the query gene, Contig15990_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1611210_at	At2g14910	-	-	3e-1	At5g09250	KIWI	O.I.	H.G.	S.X.	Please select
0.03	4.2	1617607_at	At2g14910	-	-	3e-2	At4g17090	CT-BMY (CHLOROPLAST BETA-AMYLASE)	O.I.	H.G.	S.X.	Please select
0.02	3.2	1612117_at	At2g14910	hypothetical protein LOC100258476	-	2e-33	At1g01650	aspartic-type endopeptidase/ peptidase	O.I.	H.G.	S.X.	Please select
0.01	2.1	1607928_at	At2g14910	-	-	5e-3	At4g08230	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.01	2.1	1615235_at	At2g14910	hypothetical protein LOC100262830	-	1e-16	At3g43240	ARID/BRIGHT DNA-binding domain-containing protein	O.I.	H.G.	S.X.	Please select
0.01	2.1	1619711_at	At2g14910	hypothetical protein LOC100248740	-	3e-1	At3g48940	remorin family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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