Co-expression analysis

Gene ID Contig15982_at
Gene name
Homology with ArabidopsisSimilar to At3g19290: ABF4 (ABRE BINDING FACTOR 4) (HF=3e-4)
Module size 6 genes
NF 0.52
%ile 72.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.98Contig15982_atContig15982--3e-4At3g19290ABF4 (ABRE BINDING FACTOR 4)O.I.H.G.S.X.
0.5369.70.98HM01F24T_s_atHM01F24T--4e-5At2g3337060S ribosomal protein L23 (RPL23B)O.I.H.G.S.X.
0.5369.70.98Contig19492_atContig19492--5e-1At5g41340UBC4 (UBIQUITIN CONJUGATING ENZYME 4)O.I.H.G.S.X.
0.5066.90.98Contig10241_atContig10241--2e-9At1g29120unknown proteinO.I.H.G.S.X.
0.3647.10.98Contig19387_atContig19387--2e-1At3g30580unknown proteinO.I.H.G.S.X.
0.3240.30.98HY09M22u_s_atHY09M22u--3e+0At2g04378beta-galactosidaseO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
44.699.9GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
22.699.8GSM261042before 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
14.699.5GSM311255hsp5_with_aphids_3GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
12.299.4GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
10.799.2GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
10.399.1GSM311254hsp5_with_aphids_2GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
10.299.1GSM311256hsp5_without_aphids_1GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
10.199.1GSM311257hsp5_without_aphids_2GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
10.099.1GSM311253hsp5_with_aphids_1GSE12584Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines Link to GEO
9.699.0GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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