Co-expression analysis

Gene ID Contig15956_at
Gene name
Homology with ArabidopsisSimilar to At4g00130: - (HF=7e-1)
Module size 25 genes
NF 0.38
%ile 51.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7790.80.94Contig15956_atContig15956--7e-1At4g00130-O.I.H.G.S.X.
0.5874.90.96Contig13261_atContig13261--4e-5At4g13730RabGAP/TBC domain-containing proteinO.I.H.G.S.X.
0.5369.70.96Contig1139_s_atContig1139--1e-19At3g0711060S ribosomal protein L13A (RPL13aA)O.I.H.G.S.X.
0.5167.50.96HT05P07u_s_atHT05P07u--3e+0At1g32585VQ motif-containing protein-relatedO.I.H.G.S.X.
0.4458.90.95Contig10962_atContig10962--1e+0At4g27657unknown proteinO.I.H.G.S.X.
0.4458.90.96Contig14264_atContig14264--2e+0At1g48780unknown proteinO.I.H.G.S.X.
0.4458.90.96Contig7911_atContig7911--2e-4At4g28400protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.4255.20.95Contig16251_atContig16251--2e-2At1g74140-O.I.H.G.S.X.
0.4153.90.97Contig18744_atContig18744--2e+0At5g41630F-box family proteinO.I.H.G.S.X.
0.4153.90.95rbags21n02_atrbags21n02--3e-1At2g46680ATHB-7 (ARABIDOPSIS THALIANA HOMEOBOX 7)O.I.H.G.S.X.
0.3950.50.95Contig17597_atContig17597--6e+0At5g61100-O.I.H.G.S.X.
0.3545.10.97HY03E10u_s_atHY03E10u--1e+1At5g63060transporterO.I.H.G.S.X.
0.3545.10.95Contig11674_atContig11674--3e-1At5g49420MADS-box protein (AGL84)O.I.H.G.S.X.
0.3545.10.96Contig1434_s_atContig1434--2e-1At5g58580ATL63 (ARABIDOPSIS TÓO.I.H.G.S.X.
0.3342.60.95Contig23564_atContig23564--1e+0At1g09932phosphoglycerate/bisphosphoglycerate mutase-relatedO.I.H.G.S.X.
0.3342.60.96Contig13274_atContig13274--9e-3At1g71690unknown proteinO.I.H.G.S.X.
0.3240.30.95Contig8291_atContig8291--7e-4At5g58020unknown proteinO.I.H.G.S.X.
0.3240.30.96Contig9554_s_atContig9554--8e-8At4g01560MEE49 (maternal effect embryo arrest 49)O.I.H.G.S.X.
0.3037.00.96Contig97_atContig97--2e-8At3g16640TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)O.I.H.G.S.X.
0.2935.50.96HW01F06u_atHW01F06u--3e+0At5g58360ATOFP3O.I.H.G.S.X.
0.2935.50.96Contig26395_atContig26395--5e+0At5g07460PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)O.I.H.G.S.X.
0.2835.50.95Contig16722_atContig16722--8e-15At3g24210ankyrin repeat family proteinO.I.H.G.S.X.
0.2528.90.96Contig8059_atContig8059--8e-18At1g08720EDR1 (ENHANCED DISEASE RESISTANCE 1)O.I.H.G.S.X.
0.2224.20.96Contig841_x_atContig841--1e-35At2g34420LHB1B2O.I.H.G.S.X.
0.2122.60.96Contig10643_atContig10643--1e-1At1g48140dolichol-phosphate mannosyltransferase-relatedO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.998.9GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
5.197.3GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
4.496.6GSM215727Control (DMSO) treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
4.496.6GSM282041Control_dryseed_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
4.396.4GSM215730Control (DMSO) treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.695.3GSM282025Control_dryseed_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.294.3GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.093.8GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
2.993.4GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.491.4GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage