Co-expression analysis

Gene ID Contig1591_s_at
Gene name
Homology with ArabidopsisSimilar to At1g75950: SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) (HF=2e-12)
Module size 6 genes
NF 0.35
%ile 47.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.93Contig1591_s_atContig1591--2e-12At1g75950SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)O.I.H.G.S.X.
0.4458.90.95Contig23019_atContig23019--2e+0At1g73780protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.2732.10.96HY06F24u_x_atHY06F24u--1e+1At5g05710pleckstrin homology (PH) domain-containing proteinO.I.H.G.S.X.
0.2732.10.97HV_CEa0014H05r2_atHV_CEa0014H05r2--3e+0At5g64850unknown proteinO.I.H.G.S.X.
0.2528.90.96Contig21533_atContig21533--2e+0At1g24000Bet v I allergen family proteinO.I.H.G.S.X.
0.2326.10.97HS05N06r_atHS05N06r--9e-1At1g79110protein binding / zinc ion bindingO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6178.70.96HZ55F22r_atHZ55F22r--4e+0At4g18740transcription termination factorO.I.H.G.S.X.
0.6077.30.93HVSMEk0006K21r2_x_atHVSMEk0006K21r2--4e-1At5g54590protein kinase family proteinO.I.H.G.S.X.
0.6077.30.96EBro08_SQ008_B03_atEBro08_SQ008_B03--9e-1At5g13440ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putativeO.I.H.G.S.X.
0.5572.00.96Contig2379_s_atContig2379--2e-8At2g04700ferredoxin thioredoxin reductase catalytic beta chain family proteinO.I.H.G.S.X.
0.5572.00.96HS08C02u_atHS08C02u--4e-1At2g44820unknown proteinO.I.H.G.S.X.
0.5572.00.96Contig20777_atContig20777--1e-1At3g47640basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.5066.90.91Contig25028_atContig25028--5e+0At5g19190unknown proteinO.I.H.G.S.X.
0.5066.90.92HVSMEf0001F23r2_atHVSMEf0001F23r2--9e+0At4g26030transcription factorO.I.H.G.S.X.
0.5066.90.93HVSMEg0010H15r2_s_atHVSMEg0010H15r2--3e+0At4g25630FIB2 (FIBRILLARIN 2)O.I.H.G.S.X.
0.5066.90.94rbags12l21_atrbags12l21--9e-1At1g27300unknown proteinO.I.H.G.S.X.
0.5066.90.94HM04C22u_atHM04C22u--5e+0At3g20000TOM40O.I.H.G.S.X.
0.5066.90.95HVSMEi0020D12r2_s_atHVSMEi0020D12r2--2e+0At4g33960unknown proteinO.I.H.G.S.X.
0.5066.90.96HVSMEl0025J01f_atHVSMEl0025J01f--1e+1At5g65166unknown proteinO.I.H.G.S.X.
0.5066.90.96Contig21090_atContig21090--1e+0At3g06760-O.I.H.G.S.X.
0.5066.90.96Contig22936_atContig22936--1e-1At5g47180vesicle-associated membrane family protein / VAMP family proteinO.I.H.G.S.X.
0.5066.90.97Contig12986_atContig12986--7e-13At3g28007nodulin MtN3 family proteinO.I.H.G.S.X.
0.5066.90.97EBem04_SQ003_H15_atEBem04_SQ003_H15--3e+0At5g33806unknown proteinO.I.H.G.S.X.
0.5066.90.98HVSMEg0002G01r2_x_atHVSMEg0002G01r2--6e+0At5g39360EDL2 (EID1-like 2)O.I.H.G.S.X.
0.4762.20.94EBro08_SQ006_K22_atEBro08_SQ006_K22--4e+0At4g21970unknown proteinO.I.H.G.S.X.
0.4762.20.94AJ222781_atAJ222781--2e+0At2g44520COX10 (cytochrome c oxidase 10)O.I.H.G.S.X.
0.4762.20.96HS18F13u_atHS18F13u--2e-1At5g03130unknown proteinO.I.H.G.S.X.
0.4762.20.96EBro08_SQ007_C12_atEBro08_SQ007_C12--9e-1At5g61270PIF7 (PHYTOCHROME-INTERACTING FACTOR7)O.I.H.G.S.X.
0.4661.00.91EBro08_SQ002_C24_atEBro08_SQ002_C24--1e+0At4g20390integral membrane family proteinO.I.H.G.S.X.
0.4661.00.93HVSMEa0012K02r2_atHVSMEa0012K02r2--5e+0At3g01329-O.I.H.G.S.X.
0.4661.00.94Contig15492_atContig15492--1e-1At3g07600heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.4661.00.94HS18B19u_x_atHS18B19u--3e+0At1g63840zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4661.00.95Contig25088_atContig25088--2e-18At5g36210serine-type peptidaseO.I.H.G.S.X.
0.4661.00.95HC01H02_T3_atHC01H02_T3--3e+0At1g70220unknown proteinO.I.H.G.S.X.
0.4661.00.96HVSMEm0004M18r2_atHVSMEm0004M18r2--2e+0At3g09970calcineurin-like phosphoesterase family proteinO.I.H.G.S.X.
0.4661.00.97Contig10097_atContig10097--4e-1At3g16450jacalin lectin family proteinO.I.H.G.S.X.
0.4458.90.92HVSMEa0009F12r2_s_atHVSMEa0009F12r2--4e+0At5g43580serine-type endopeptidase inhibitorO.I.H.G.S.X.
0.4458.90.92HV05H03u_atHV05H03u--1e+1At4g14270-O.I.H.G.S.X.
0.4458.90.93HVSMEi0020C22r2_atHVSMEi0020C22r2--3e+0At5g17710EMB1241 (embryo defective 1241)O.I.H.G.S.X.
0.4458.90.93HVSMEa0011L07r2_atHVSMEa0011L07r2--1e+1At5g37270zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4458.90.93HZ01L14u_atHZ01L14u--1e+0Atmg00550-O.I.H.G.S.X.
0.4458.90.95EBma05_SQ003_B12_atEBma05_SQ003_B12--8e+0At1g31335unknown proteinO.I.H.G.S.X.
0.4458.90.95Contig20393_atContig20393--2e-2At1g23900GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1)O.I.H.G.S.X.
0.4458.90.95MitoContig13_atMitoContig13--3e+0At3g27430PBB1O.I.H.G.S.X.
0.4458.90.95HVSMEa0011N23r2_atHVSMEa0011N23r2--4e+0At1g04260MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7)O.I.H.G.S.X.
0.4458.90.95HW03I17u_atHW03I17u--4e+0At5g38760unknown proteinO.I.H.G.S.X.
0.4458.90.96HA31O01r_atHA31O01r--3e+0At2g10970invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.4458.90.96HT11A16u_x_atHT11A16u--2e+0At1g64080unknown proteinO.I.H.G.S.X.
0.4458.90.97HS08P03u_atHS08P03u--9e+0At2g18530protein kinase family proteinO.I.H.G.S.X.
0.4458.90.97Contig245_s_atContig245--2e+0At4g16380metal ion bindingO.I.H.G.S.X.
0.4356.40.91HU10F14u_atHU10F14u--1e+1At5g04347-O.I.H.G.S.X.
0.4356.40.93Contig4041_atContig4041--2e+0At1g80420DNA repair protein, putative (XRCC1)O.I.H.G.S.X.
0.4356.40.95Contig15688_atContig15688--8e+0At4g11780unknown proteinO.I.H.G.S.X.
0.4356.40.96HT11O20u_atHT11O20u--1e-2At4g04040MEE51 (maternal effect embryo arrest 51)O.I.H.G.S.X.
0.4356.40.96S0000800072B12F1_atS0000800072B12F1--9e+0At1g07476unknown proteinO.I.H.G.S.X.
0.4255.20.93Contig17442_atContig17442--1e-13At4g15030unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.999.1GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.198.7GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.098.7GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
7.898.6GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.398.5GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.298.5GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.598.2GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.498.1GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.197.3GSM440962Stressed lemma_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.097.2GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage