Co-expression analysis

Gene ID	Contig1591_s_at
Gene name
Homology with Arabidopsis	Similar to At1g75950: SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) (HF=2e-12)
Module size	6 genes
NF	0.35
%ile	47.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.93	Contig1591_s_at	Contig1591	-	-	2e-12	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.95	Contig23019_at	Contig23019	-	-	2e+0	At1g73780	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.96	HY06F24u_x_at	HY06F24u	-	-	1e+1	At5g05710	pleckstrin homology (PH) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.97	HV_CEa0014H05r2_at	HV_CEa0014H05r2	-	-	3e+0	At5g64850	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.96	Contig21533_at	Contig21533	-	-	2e+0	At1g24000	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.97	HS05N06r_at	HS05N06r	-	-	9e-1	At1g79110	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.9	99.1	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.1	98.7	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.0	98.7	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
7.8	98.6	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.3	98.5	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.2	98.5	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.5	98.2	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.4	98.1	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.0	97.2	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the soybean gene, Gma.5575.2.S1_at, orthologous to the query gene, Contig1591_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.9	Gma.5575.2.S1_at	At1g75950	-	-	7e-30	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.79	90.8	GmaAffx.78204.1.S1_at	At1g75950	-	-	7e-3	At4g25315	Expressed protein	O.I.	H.G.	S.X.	Please select
0.70	87.1	GmaAffx.52028.1.S1_at	At1g75950	-	-	1e-50	At5g20570	RBX1 (RING-BOX 1)	O.I.	H.G.	S.X.	Please select
0.65	83.8	GmaAffx.21619.1.S1_at	At1g75950	-	-	9e-80	At5g56280	CSN6A	O.I.	H.G.	S.X.	Please select
0.56	78.2	GmaAffx.87924.1.S1_at	At1g75950	-	-	9e-39	At3g05000	transport protein particle (TRAPP) component Bet3 family protein	O.I.	H.G.	S.X.	Please select
0.55	76.3	GmaAffx.79097.1.S1_at	At1g75950	-	-	3e-1	At3g44760	unknown protein	O.I.	H.G.	S.X.	Please select
0.51	72.3	GmaAffx.91500.1.S1_at	At1g75950	-	-	1e-43	At1g02140	MAGO (MAGO NASHI)	O.I.	H.G.	S.X.	Please select
0.51	72.3	Gma.6851.1.S1_at	At1g75950	-	-	1e-69	At1g09630	ATRAB11C (ARABIDOPSIS RAB GTPASE 11C)	O.I.	H.G.	S.X.	Please select
0.49	68.3	Gma.17781.1.A1_s_at	At1g75950	-	-	3e-32	At5g11340	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please select
0.46	65.5	Gma.2892.1.S1_at	At1g75950	-	-	3e-36	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	O.I.	H.G.	S.X.	Please select
0.43	60.6	GmaAffx.91748.1.S1_s_at	At1g75950	-	-	1e-102	At2g01970	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select
0.41	58.1	GmaAffx.34172.1.S1_s_at	At1g75950	-	-	5e-18	At1g09150	pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.41	58.1	Gma.8227.2.S1_a_at	At1g75950	-	-	5e-28	At2g26590	adhesion regulating molecule family	O.I.	H.G.	S.X.	Please select
0.38	53.3	Gma.2892.2.S1_at	At1g75950	-	-	5e-47	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	O.I.	H.G.	S.X.	Please select
0.37	51.7	Gma.3084.2.S1_a_at	At1g75950	-	-	1e+0	At2g24395	chaperone protein dnaJ-related	O.I.	H.G.	S.X.	Please select
0.35	48.6	Gma.954.1.S1_at	At1g75950	-	-	7e-3	At2g45640	SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18)	O.I.	H.G.	S.X.	Please select
0.35	48.6	Gma.11256.1.S1_at	At1g75950	-	-	7e-28	At1g56450	PBG1	O.I.	H.G.	S.X.	Please select
0.34	47.2	Gma.11094.2.S1_a_at	At1g75950	-	-	1e-10	At2g14835	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	Gma.7065.1.S1_at	At1g75950	-	-	1e-7	At1g54080	oligouridylate-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.32	43.7	Gma.17905.2.S1_at	At1g75950	-	-	8e-37	At4g01320	ATSTE24	O.I.	H.G.	S.X.	Please select
0.32	43.7	Gma.3820.3.S1_a_at	At1g75950	-	-	3e-3	At1g30230	elongation factor 1-beta / EF-1-beta	O.I.	H.G.	S.X.	Please select
0.29	39.0	Gma.11129.2.S1_x_at	At1g75950	-	-	8e-39	At3g05840	ATSK12	O.I.	H.G.	S.X.	Please select
0.25	32.6	Gma.3626.2.S1_x_at	At1g75950	-	-	2e-60	At3g59920	ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage