Co-expression analysis

Gene ID Contig1591_s_at
Gene name
Homology with ArabidopsisSimilar to At1g75950: SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) (HF=2e-12)
Module size 6 genes
NF 0.35
%ile 47.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.93Contig1591_s_atContig1591--2e-12At1g75950SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)O.I.H.G.S.X.
0.4458.90.95Contig23019_atContig23019--2e+0At1g73780protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.2732.10.96HY06F24u_x_atHY06F24u--1e+1At5g05710pleckstrin homology (PH) domain-containing proteinO.I.H.G.S.X.
0.2732.10.97HV_CEa0014H05r2_atHV_CEa0014H05r2--3e+0At5g64850unknown proteinO.I.H.G.S.X.
0.2528.90.96Contig21533_atContig21533--2e+0At1g24000Bet v I allergen family proteinO.I.H.G.S.X.
0.2326.10.97HS05N06r_atHS05N06r--9e-1At1g79110protein binding / zinc ion bindingO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.999.1GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.198.7GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.098.7GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
7.898.6GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.398.5GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.298.5GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.598.2GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.498.1GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.197.3GSM440962Stressed lemma_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.097.2GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g75950, orthologous to the query gene, Contig1591_s_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At1g75950843928SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)SKP1 is core component of the SCF family of E3 ubiquitin ligases and serves to tether the rest of the complex to an F-box protein, which provides specificity in binding to ubiquitin ligase substrate proteins. Predominately expressed from leptotene to pachytene. Negatively regulates recombination. Interacts with P0, a silencing suppressor protein encoded by poleroviruses by means of a conserved minimal F-box motif.O.I.H.G.S.X.
0.4963.5At3g52560824422UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4)MMZ4/UEV1D encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1D can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. It can also rescue an mms2 ubc13 double mutant in yeast in combination with UBC13A. MMZ4/UEV1D transcripts are found in most plant organs, like the other three MMZ/UEV1 family members, but it is normally present at higher levels. In addition, MMZ4/UEV1D is the only family member whose transcripts are detected in pollen. However, MMZ4/UEV1D transcript levels do not appear to be stress-inducible. uev1d-1 mutants are more sensitive than wild type plants to the DNA damaging agent MMS in seed germination and pollen germination assays.O.I.H.G.S.X.
0.4862.5At4g40040830165histone H3.2F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MFPOO.I.H.G.S.X.
0.4761.2At1g65720842883unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.4457.2At4g02080827368ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2)A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.O.I.H.G.S.X.
0.4253.9At2g19340816451membrane protein, putativeF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPOO.I.H.G.S.X.
0.4152.4At4g40030830164histone H3.2F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MFPOO.I.H.G.S.X.
0.4050.8At5g54680835557ILR3 (iaa-leucine resistant3)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOFBAO.I.H.G.S.X.
0.3948.4At5g51880835263iron ion binding / oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donorsF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, iron ion binding;P:protein metabolic process;C:cellular_component unknown;FBOPMO.I.H.G.S.X.
0.3338.1At1g08970837417NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9)heme activated protein (HAP5c)O.I.H.G.S.X.
0.3235.7At3g11530820326vacuolar protein sorting 55 family protein / VPS55 family proteinF:transporter activity;P:transport;C:vacuole;FMPOO.I.H.G.S.X.
0.3235.7At2g21600816698ATRER1BKey player of retrieval of ER membrane proteinsO.I.H.G.S.X.
0.3133.8At1g80040844344unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMOO.I.H.G.S.X.
0.3133.8At5g59880836110ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)Encodes actin depolymerizing factor 3 (ADF3).O.I.H.G.S.X.
0.3032.1At5g42000834205ORMDL family proteinF:molecular_function unknown;P:protein folding;C:integral to membrane, endoplasmic reticulum;MFPOO.I.H.G.S.X.
0.2930.3At3g54840824649ARA6Encodes a novel Rab-like GTP-ase that is localized to the peripheral membrane of the endosome.O.I.H.G.S.X.
0.2930.3At5g58060835918YKT61member of YKT6 Gene FamilyO.I.H.G.S.X.
0.2930.3At4g12230826831esterase/lipase/thioesterase family proteinF:catalytic activity;P:biological_process unknown;C:cellular_component unknown;BOMPAFVO.I.H.G.S.X.
0.2830.3At2g19790816498clathrin adaptor complex small chain family proteinF:protein transporter activity, protein binding;P:intracellular protein transport, transport, vesicle-mediated transport, protein transport;C:membrane coat, clathrin vesicle coat;MOFPO.I.H.G.S.X.
0.2830.3At5g39510833947SGR4 (SHOOT GRAVITROPSIM 4)Encodes a member of SNARE gene family. Homologous with yeast VTI1 and is involved in vesicle transport. Mutant alleles such as sgr4/zig are defective in the shoots response to gravity resulting in a zigzag growth pattern of the stem. Involved in protein trafficking to lytic vacuoles. Can conditionally substitute VTI12 in protein storage vacuole trafficking when plants are devoid of VTI12.O.I.H.G.S.X.
0.2726.2At1g35160840403GF14 PHI (GF14 PROTEIN PHI CHAIN)GF14 protein phi chain member of 14-3-3 protein family. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1O.I.H.G.S.X.
0.2726.2At1g26630839203FBR12 (FUMONISIN B1-RESISTANT12)Eukaryotic translation initiation factor 5A-2. Involved in programmed cell death triggered as a response to pseudomonas syringae infection. Loss of function mutants are more resistant to infection.O.I.H.G.S.X.
0.2726.2At3g03070821133NADH-ubiquinone oxidoreductase-relatedF:unknown;P:unknown;C:mitochondrion;MFPOO.I.H.G.S.X.
0.2522.6At5g54540835542-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMO.I.H.G.S.X.
0.2420.7At5g08290830725YLS8Encodes Dim1 homolog.O.I.H.G.S.X.
0.2420.7At1g02140837560MAGO (MAGO NASHI)F:protein binding;P:embryonic development ending in seed dormancy, pollen tube guidance, sex determination;C:in 6 components;MFOPO.I.H.G.S.X.
0.2319.3At2g47170819330ARF1A1CGene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. Members of this family are known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.O.I.H.G.S.X.
0.2217.5At5g38470833835DNA repair protein RAD23, putativeF:damaged DNA binding;P:response to cold, nucleotide-excision repair;C:nucleus;MPOFBVAO.I.H.G.S.X.
0.2014.4At3g12260820406complex 1 family protein / LVR family proteinF:catalytic activity;P:unknown;C:mitochondrion, respiratory chain complex I, membrane;MFPOO.I.H.G.S.X.
0.168.8At3g01340821216protein transport protein SEC13 family protein / WD-40 repeat family proteinF:nucleotide binding;P:intracellular protein transport, membrane budding;C:cellular_component unknown;MFBOPAO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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