Co-expression analysis

Gene ID	Contig15917_at
Gene name
Homology with Arabidopsis	Similar to At3g58070: GIS (GLABROUS INFLORESCENCE STEMS) (HF=3e-1)
Module size	6 genes
NF	0.27
%ile	35.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.5	0.94	Contig15917_at	Contig15917	-	-	3e-1	At3g58070	GIS (GLABROUS INFLORESCENCE STEMS)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.94	Contig14156_at	Contig14156	-	-	3e+0	At1g74960	FAB1 (FATTY ACID BIOSYNTHESIS 1)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.93	Contig12216_at	Contig12216	-	-	6e+0	At4g39130	dehydrin family protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.94	Contig5284_at	Contig5284	-	-	2e-82	At5g22780	adaptin family protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.93	Contig20133_at	Contig20133	-	-	1e-7	At2g36250	FTSZ2-1	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.94	Contig10917_at	Contig10917	-	-	5e-2	At4g17090	CT-BMY (CHLOROPLAST BETA-AMYLASE)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.9	98.3	GSM261041	Dicktoo-deacclimation-rep3	GSE10329	Low temperature stress in cv. Dicktoo
6.7	98.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.3	97.4	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
5.2	97.4	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.5	96.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.6	95.3	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
3.0	93.8	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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