Co-expression analysis

Gene ID Contig15915_at
Gene name
Homology with ArabidopsisSimilar to At1g24400: LHT2 (LYSINE HISTIDINE TRANSPORTER 2) (HF=2e-3)
Module size 6 genes
NF 0.14
%ile 17.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7187.10.94Contig15915_atContig15915--2e-3At1g24400LHT2 (LYSINE HISTIDINE TRANSPORTER 2)O.I.H.G.S.X.
0.5066.90.96Contig3380_s_atContig3380--4e+0At3g59960ASHH4 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH4)O.I.H.G.S.X.
0.5066.90.96Contig3131_atContig3131--6e-6At4g00860ATOZI1O.I.H.G.S.X.
0.4458.90.96HVSMEf0019K16r2_atHVSMEf0019K16r2--4e+0At5g09270unknown proteinO.I.H.G.S.X.
0.064.80.95Contig17679_atContig17679--4e-1At3g14200DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.043.40.94Contig20237_atContig20237--1e+0At1g61810BGLU45 (BETA-GLUCOSIDASE 45)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.199.8GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
18.999.7GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
15.799.6GSM431549pathogen isolates: Polymyxa graminis - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
10.799.2GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
7.198.4GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
6.198.0GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
5.797.7GSM431547pathogen isolates: Mock - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
5.397.4GSM431572pathogen isolates: Polymyxa betae - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
5.097.2GSM16082619% SWC rep3GSE6990Barley drought stressLink to GEO
4.496.6GSM261022ABA-Control-rep2GSE10328ABA experimentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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