Co-expression analysis

Gene ID	Contig15915_at
Gene name
Homology with Arabidopsis	Similar to At1g24400: LHT2 (LYSINE HISTIDINE TRANSPORTER 2) (HF=2e-3)
Module size	6 genes
NF	0.14
%ile	17.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	0.94	Contig15915_at	Contig15915	-	-	2e-3	At1g24400	LHT2 (LYSINE HISTIDINE TRANSPORTER 2)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig3380_s_at	Contig3380	-	-	4e+0	At3g59960	ASHH4 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH4)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig3131_at	Contig3131	-	-	6e-6	At4g00860	ATOZI1	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	HVSMEf0019K16r2_at	HVSMEf0019K16r2	-	-	4e+0	At5g09270	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.95	Contig17679_at	Contig17679	-	-	4e-1	At3g14200	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.94	Contig20237_at	Contig20237	-	-	1e+0	At1g61810	BGLU45 (BETA-GLUCOSIDASE 45)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
23.1	99.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
18.9	99.7	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
15.7	99.6	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
10.7	99.2	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.1	98.4	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
6.1	98.0	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.7	97.7	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.3	97.4	GSM431572	pathogen isolates: Polymyxa betae - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
5.0	97.2	GSM160826	19% SWC rep3	GSE6990	Barley drought stress
4.4	96.6	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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