Co-expression analysis

Gene ID	Contig15867_at
Gene name
Homology with Arabidopsis	Similar to At3g18400: anac058 (Arabidopsis NAC domain containing protein 58) (HF=7e-3)
Module size	36 genes
NF	0.25
%ile	31.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	98.4	0.91	Contig15867_at	Contig15867	-	-	7e-3	At3g18400	anac058 (Arabidopsis NAC domain containing protein 58)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.94	Contig14813_at	Contig14813	-	-	1e-3	At1g49975	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.92	Contig11866_at	Contig11866	-	-	2e-3	At1g61460	S-locus protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.94	Contig2918_s_at	Contig2918	UDP-D-glucuronate decarboxylase	-	7e-18	At2g47650	UXS4 (UDP-XYLOSE SYNTHASE 4)	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.92	Contig1669_at	Contig1669	-	-	5e-13	At1g48830	40S ribosomal protein S7 (RPS7A)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.92	Contig12701_at	Contig12701	-	-	9e-1	At5g67390	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.92	Contig19093_at	Contig19093	-	-	2e-1	At1g47210	cyclin family protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.91	Contig10791_s_at	Contig10791	-	-	2e-6	At1g02260	transmembrane protein, putative	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.95	Contig12304_at	Contig12304	-	-	1e-2	At3g25580	thioredoxin-related	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.92	Contig4578_at	Contig4578	-	-	7e-9	At5g21150	PAZ domain-containing protein / piwi domain-containing protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.93	Contig9373_at	Contig9373	-	-	1e-1	At5g46660	CHP-rich zinc finger protein, putative	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.94	Contig12800_s_at	Contig12800	-	-	2e-5	At5g46340	O-acetyltransferase-related	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.94	Contig5333_s_at	Contig5333	-	-	4e-1	At5g62720	integral membrane HPP family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	Contig4595_at	Contig4595	-	-	6e-8	At1g14260	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.94	Contig12713_at	Contig12713	-	-	7e-3	At4g01900	GLB1 (GLNB1 HOMOLOG)	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.93	Contig6773_at	Contig6773	-	-	5e-3	At3g20580	COBL10 (COBRA-LIKE PROTEIN 10 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.93	Contig15394_at	Contig15394	-	-	2e+0	At1g56700	pyrrolidone-carboxylate peptidase family protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.95	Contig2510_at	Contig2510	-	-	6e-4	At3g05550	hypoxia-responsive family protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.92	Contig20070_at	Contig20070	-	-	2e-4	At5g16440	IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.94	Contig7831_at	Contig7831	-	-	6e-23	At4g17190	FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.95	Contig12335_at	Contig12335	-	-	5e-20	At2g22120	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.93	Contig20966_at	Contig20966	-	-	2e+0	At1g36622	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig7916_at	Contig7916	-	-	5e-1	At2g21100	disease resistance-responsive protein-related / dirigent protein-related	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.93	Contig12803_at	Contig12803	-	-	2e-13	At3g20870	metal transporter family protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.95	Contig19041_at	Contig19041	-	-	5e+0	At4g22850	-	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.95	Contig5285_at	Contig5285	-	-	1e+0	At2g36210	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.96	Contig15750_at	Contig15750	-	-	6e+0	At1g04270	RPS15 (CYTOSOLIC RIBOSOMAL PROTEIN S15)	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.95	Contig8068_at	Contig8068	-	-	3e+0	At2g30560	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.95	Contig333_3_x_at	Contig333_3	-	-			-	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.94	Contig617_x_at	Contig617	-	-	7e-34	At2g34430	LHB1B1	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.96	Contig8746_at	Contig8746	-	-	1e-37	At3g08930	-	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.95	Contig5409_at	Contig5409	-	-	3e-18	At3g02580	STE1 (STEROL 1)	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.95	Contig18794_at	Contig18794	-	-	8e+0	At3g54940	-	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.95	Contig19804_at	Contig19804	-	-	2e+0	At3g54040	photoassimilate-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.94	Contig12181_at	Contig12181	-	-	1e-1	At1g30660	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.95	Contig5295_at	Contig5295	-	-	2e-113	At2g27210	kelch repeat-containing serine/threonine phosphoesterase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.0	97.9	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
2.6	92.3	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.6	92.3	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.5	91.9	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
2.5	91.9	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.3	90.9	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
2.3	90.9	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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