Co-expression analysis

Gene ID Contig15831_at
Gene name
Homology with ArabidopsisSimilar to At3g15190: chloroplast 30S ribosomal protein S20, putative (HF=1e+0)
Module size 6 genes
NF 0.49
%ile 69.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6380.30.96Contig15831_atContig15831--1e+0At3g15190chloroplast 30S ribosomal protein S20, putativeO.I.H.G.S.X.
0.6784.70.96Contig9191_atContig9191--2e+0At2g18200unknown proteinO.I.H.G.S.X.
0.6178.70.96Contig13522_atContig13522--4e-17At4g02630protein kinase family proteinO.I.H.G.S.X.
0.5066.90.96Contig11108_atContig11108--8e-4At3g05545transcription factor, putative / zinc finger (C3HC4 type RING finger) family proteinO.I.H.G.S.X.
0.4458.90.96Contig10540_atContig10540--7e-8At3g57890tubulin-specific chaperone C-relatedO.I.H.G.S.X.
0.2122.60.96rbah59f07_s_atrbah59f07--4e+0At3g24160PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.698.2GSM440966Stressed palea_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.997.9GSM440960Stressed lemma_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
5.197.3GSM398251Martin_0d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
5.097.2GSM440968Stressed palea_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.895.7GSM440962Stressed lemma_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.895.7GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.695.3GSM398264HS41-1_1d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.595.1GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.494.8GSM440961Stressed lemma_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.494.8GSM440972Stressed awn_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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