Co-expression analysis

Gene ID	Contig15808_at
Gene name
Homology with Arabidopsis	Similar to At2g35910: zinc finger (C3HC4-type RING finger) family protein (HF=1e-1)
Module size	30 genes
NF	0.30
%ile	39.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.87	95.0	0.93	Contig15808_at	Contig15808	-	-	1e-1	At2g35910	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.95	Contig8943_at	Contig8943	-	-	1e-6	At1g75990	26S proteasome regulatory subunit S3, putative (RPN3)	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.95	Contig15096_s_at	Contig15096	-	-	2e-1	At5g51720	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.96	Contig17683_at	Contig17683	-	-	2e+0	At3g11730	ATFP8	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.95	Contig4715_at	Contig4715	-	-	1e+0	At4g10810	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.94	Contig26297_at	Contig26297	-	-	4e+0	At5g38630	ACYB-1	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig5894_s_at	Contig5894	-	-	3e-1	At5g33300	chromosome-associated kinesin-related	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.95	Contig10954_at	Contig10954	-	-	4e+0	At3g21175	ZML1 (ZIM-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	Contig23996_at	Contig23996	-	-	6e-9	At4g39970	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.94	EBro03_SQ008_H22_at	EBro03_SQ008_H22	-	-	4e-6	At4g32605	-	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	Contig416_x_at	Contig416	-	-	5e-29	At4g24190	SHD (SHEPHERD)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.95	Contig9332_at	Contig9332	-	-	6e+0	At3g01470	ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig15165_s_at	Contig15165	-	-	2e+0	At3g28460	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.96	Contig6739_at	Contig6739	-	-	4e-40	At1g69340	appr-1-p processing enzyme family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	Contig6264_at	Contig6264	-	-	2e-5	At3g11330	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	Contig5896_at	Contig5896	-	-	3e-5	At3g02770	dimethylmenaquinone methyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.96	Contig4737_s_at	Contig4737	-	-	3e-29	At2g35040	AICARFT/IMPCHase bienzyme family protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.96	Contig4475_at	Contig4475	-	-	1e-1	At1g71840	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.97	HU09F16u_s_at	HU09F16u	-	-	8e-1	At2g30980	ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta)	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.95	Contig167_x_at	Contig167	-	-	2e-8	At1g08880	H2AXA	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.95	HVSMEg0010L05r2_at	HVSMEg0010L05r2	-	-	2e+0	At2g45610	hydrolase	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.94	Contig5749_at	Contig5749	-	-	6e-16	At2g25310	carbohydrate binding	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.94	Contig14530_at	Contig14530	-	-	2e+0	At1g10820	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.94	Contig12594_at	Contig12594	-	-	3e+0	At5g11990	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.94	Contig19861_at	Contig19861	-	-	6e-3	At5g15360	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.95	Contig10032_at	Contig10032	-	-	7e-3	At5g09850	transcription elongation factor-related	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.96	Contig4350_s_at	Contig4350	-	-	2e-85	At2g42790	CSY3 (citrate synthase 3)	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.95	Contig5159_at	Contig5159	-	-	1e-23	At5g17440	LUC7 N_terminus domain-containing protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.96	Contig9785_at	Contig9785	-	-	9e-4	At4g25620	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.95	Contig4137_at	Contig4137	-	-	2e+0	At1g70895	CLE17 (CLAVATA3/ESR-RELATED 17)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.7	92.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.6	92.3	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
2.6	92.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.4	91.4	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.4	91.4	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.3	90.9	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
2.3	90.9	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.2	90.3	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.1	89.7	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.1	89.7	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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