Co-expression analysis

Gene ID Contig15773_at
Gene name
Homology with ArabidopsisSimilar to At4g05240: ubiquitin family protein (HF=4e+0)
Module size 6 genes
NF 0.83
%ile 97.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.94Contig15773_atContig15773--4e+0At4g05240ubiquitin family proteinO.I.H.G.S.X.
0.8092.50.92Contig8395_atContig8395--2e+0At3g51230unknown proteinO.I.H.G.S.X.
0.8092.50.92Contig18382_atContig18382--4e+0At5g52200unknown proteinO.I.H.G.S.X.
0.8092.50.94HS06G05u_s_atHS06G05ulate embryogenesis abundant protein-like-4e+0At1g32250calmodulin, putativeO.I.H.G.S.X.
0.6784.70.92Contig13813_atContig13813--3e+1At5g17070unknown proteinO.I.H.G.S.X.
0.6178.70.92Contig1507_atContig1507--0At5g12250TUB6 (BETA-6 TUBULIN)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.099.8GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
15.399.6GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
10.999.2GSM215727Control (DMSO) treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
10.099.1GSM215728gibberellin treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
5.297.4GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.197.3GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.897.0GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.796.9GSM282032Malting_day1_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
4.396.4GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.795.5GSM215730Control (DMSO) treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage