Co-expression analysis

Gene ID Contig15767_at
Gene name
Homology with ArabidopsisSimilar to At1g21520: unknown protein (HF=1e-1)
Module size 6 genes
NF 0.50
%ile 70.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.88Contig15767_atContig15767--1e-1At1g21520unknown proteinO.I.H.G.S.X.
0.8092.50.90Contig6235_s_atContig6235--1e+0At3g27850RPL12-C (ribosomal protein l12-c)O.I.H.G.S.X.
0.6784.70.89Contig6238_s_atContig6238--1e-7At2g30860ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)O.I.H.G.S.X.
0.6178.70.87Contig6233_s_atContig6233--3e-8At5g08790ATAF2O.I.H.G.S.X.
0.3240.30.87Contig3365_atContig3365--2e-85At1g09100RPT5B (26S proteasome AAA-ATPase subunit RPT5B)O.I.H.G.S.X.
0.2326.10.85Contig145_atContig145--4e-10At1g08880H2AXAO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6784.70.83rbah58n17_s_atrbah58n17--1e+0At1g77855unknown proteinO.I.H.G.S.X.
0.4458.90.87HVSMEf0003F23r2_atHVSMEf0003F23r2--9e-1At5g09570-O.I.H.G.S.X.
0.4053.10.81AF026538_atAF026538ABA-responsive protein-7e-1At2g37580zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4053.10.83Contig12695_atContig12695--2e-3At2g43560immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinO.I.H.G.S.X.
0.3647.10.83Contig14526_atContig14526--2e-16At2g21790RNR1 (RIBONUCLEOTIDE REDUCTASE 1)O.I.H.G.S.X.
0.3545.10.79HT10N20u_s_atHT10N20u--5e+0At5g15620F-box family proteinO.I.H.G.S.X.
0.3342.60.77HI04F14u_atHI04F14u--4e+0At5g16486-O.I.H.G.S.X.
0.3240.30.82Contig26206_atContig26206--7e-2At4g21620glycine-rich proteinO.I.H.G.S.X.
0.3240.30.82Contig1803_atContig1803--1e-19At3g10340PAL4 (Phenylalanine ammonia-lyase 4)O.I.H.G.S.X.
0.3138.60.79Contig12697_atContig12697--3e-9At1g52920GPCR (G PROTEIN COUPLED RECEPTOR)O.I.H.G.S.X.
0.3138.60.85Contig19275_atContig19275--9e-5At3g13850LBD22 (LOB DOMAIN-CONTAINING PROTEIN 22)O.I.H.G.S.X.
0.3037.00.81Contig17325_s_atContig17325--1e+0At5g54850unknown proteinO.I.H.G.S.X.
0.2935.50.78Contig12316_atContig12316--7e+0At5g15750RNA-binding S4 domain-containing proteinO.I.H.G.S.X.
0.2732.10.76HVSMEn0024O03f_s_atHVSMEn0024O03f--3e+0At5g40370glutaredoxin, putativeO.I.H.G.S.X.
0.2732.10.87Contig6433_atContig6433--5e-1At5g66460(1-4)-beta-mannan endohydrolase, putativeO.I.H.G.S.X.
0.2630.40.87Contig6431_atContig6431--3e-1At2g18110elongation factor 1-beta, putative / EF-1-beta, putativeO.I.H.G.S.X.
0.2630.40.78HT10N20u_atHT10N20u--5e+0At5g15620F-box family proteinO.I.H.G.S.X.
0.2630.40.84rbah11m03_s_atrbah11m03--3e-1At4g31320auxin-responsive protein, putative / small auxin up RNA (SAUR_C)O.I.H.G.S.X.
0.2528.90.82HV06O23u_atHV06O23u--1e+1At5g48860unknown proteinO.I.H.G.S.X.
0.2528.90.85HC112E03_T3_s_atHC112E03_T3ABA-responsive protein-1e-3At5g23360GRAM domain-containing protein / ABA-responsive protein-relatedO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.698.8GSM261072Albina f-17 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
7.098.4GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
6.398.1GSM261067Xantha s-46 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.997.9GSM261071Albina f-17 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.697.7GSM261061Xantha b-12 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
5.297.4GSM440972Stressed awn_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.897.0GSM261066Xantha s-46 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.696.8GSM261077Albina e-16 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
4.596.7GSM440974Stressed awn_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.196.2GSM261078Albina e-16 Hardened rep2GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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