CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig15767_at

Gene name
Homology with Arabidopsis Similar to At1g21520: unknown protein (HF=1e-1)

Module size 6 genes

NF 0.50

%ile 70.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.88 Contig15767_at Contig15767 - - 1e-1 At1g21520 unknown protein O.I. H.G. S.X.
0.80 92.5 0.90 Contig6235_s_at Contig6235 - - 1e+0 At3g27850 RPL12-C (ribosomal protein l12-c) O.I. H.G. S.X.
0.67 84.7 0.89 Contig6238_s_at Contig6238 - - 1e-7 At2g30860 ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9) O.I. H.G. S.X.
0.61 78.7 0.87 Contig6233_s_at Contig6233 - - 3e-8 At5g08790 ATAF2 O.I. H.G. S.X.
0.32 40.3 0.87 Contig3365_at Contig3365 - - 2e-85 At1g09100 RPT5B (26S proteasome AAA-ATPase subunit RPT5B) O.I. H.G. S.X.
0.23 26.1 0.85 Contig145_at Contig145 - - 4e-10 At1g08880 H2AXA O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.6 98.8 GSM261072 Albina f-17 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.0 98.4 GSM261073 Albina f-17 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.3 98.1 GSM261067 Xantha s-46 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.9 97.9 GSM261071 Albina f-17 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.6 97.7 GSM261061 Xantha b-12 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.2 97.4 GSM440972 Stressed awn_Rep1 GSE17669 Gene expression in the barley spike during drought stress
4.8 97.0 GSM261066 Xantha s-46 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.6 96.8 GSM261077 Albina e-16 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.5 96.7 GSM440974 Stressed awn_Rep3 GSE17669 Gene expression in the barley spike during drought stress
4.1 96.2 GSM261078 Albina e-16 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the rice gene, Os04g0577800, orthologous to the query gene, Contig15767_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.39 48.3 Os04g0577800 At1g21520 - Protein of unknown function UPF0136 family protein 4e-1 At2g22170 lipid-associated family protein O.I. H.G. S.X.
0.67 87.2 Os04g0412200 At1g21520 - Ferredoxin I 7e-3 At1g10960 ATFD1 (FERREDOXIN 1) O.I. H.G. S.X.
0.46 60.9 Os01g0555800 At1g21520 - Formylmethionine deformylase family protein 2e+0 At4g21080 Dof-type zinc finger domain-containing protein O.I. H.G. S.X.
0.29 31.1 Os12g0616400 At1g21520 - Transcription factor PCF8 (Fragment) 1e-1 At5g60660 PIP2 O.I. H.G. S.X.
0.21 17.9 Os02g0705000 At1g21520 - Isoflavone reductase family protein 2e+0 At5g53330 - O.I. H.G. S.X.
0.21 17.9 Os02g0833100 At1g21520 - Conserved hypothetical protein 2e-3 At4g38380 antiporter/ drug transporter O.I. H.G. S.X.
0.13 8.2 Os01g0286600 At1g21520 - Plastidal protoporphyrinogen oxidase 3e-22 At4g01690 PPOX O.I. H.G. S.X.
0.09 4.9 Os05g0361900 At1g21520 - Mitochondrial substrate carrier family protein 8e-16 At4g39460 SAMC1 (S-ADENOSYLMETHIONINE CARRIER 1) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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