Co-expression analysis

Gene ID	Contig15767_at
Gene name
Homology with Arabidopsis	Similar to At1g21520: unknown protein (HF=1e-1)
Module size	6 genes
NF	0.50
%ile	70.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.88	Contig15767_at	Contig15767	-	-	1e-1	At1g21520	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.90	Contig6235_s_at	Contig6235	-	-	1e+0	At3g27850	RPL12-C (ribosomal protein l12-c)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.89	Contig6238_s_at	Contig6238	-	-	1e-7	At2g30860	ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.87	Contig6233_s_at	Contig6233	-	-	3e-8	At5g08790	ATAF2	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.87	Contig3365_at	Contig3365	-	-	2e-85	At1g09100	RPT5B (26S proteasome AAA-ATPase subunit RPT5B)	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.85	Contig145_at	Contig145	-	-	4e-10	At1g08880	H2AXA	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.6	98.8	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.0	98.4	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.3	98.1	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.9	97.9	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.6	97.7	GSM261061	Xantha b-12 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.2	97.4	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.8	97.0	GSM261066	Xantha s-46 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.6	96.8	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.5	96.7	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.1	96.2	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.22286.1.S1_at, orthologous to the query gene, Contig15767_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	99.2	GmaAffx.22286.1.S1_at	At1g21520	-	-	4e-6	At5g65300	unknown protein	O.I.	H.G.	S.X.	Please select
0.74	89.2	GmaAffx.78435.1.S1_at	At1g21520	-	-	1e+1	Atmg00710	-	O.I.	H.G.	S.X.	Please select
0.61	81.8	GmaAffx.54986.1.S1_at	At1g21520	-	-	2e-1	At1g33800	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	76.3	GmaAffx.91156.1.S1_at	At1g21520	-	-	3e-1	At5g36970	NHL25 (NDR1/HIN1-LIKE 25)	O.I.	H.G.	S.X.	Please select
0.54	74.8	GmaAffx.91156.1.S1_x_at	At1g21520	-	-	3e-1	At5g36970	NHL25 (NDR1/HIN1-LIKE 25)	O.I.	H.G.	S.X.	Please select
0.51	72.3	GmaAffx.87547.3.S1_at	At1g21520	-	-	3e-3	At1g61810	BGLU45 (BETA-GLUCOSIDASE 45)	O.I.	H.G.	S.X.	Please select
0.51	72.3	Gma.5950.1.S1_s_at	At1g21520	-	-	4e-7	At3g13650	disease resistance response	O.I.	H.G.	S.X.	Please select
0.47	66.6	GmaAffx.64000.1.S1_at	At1g21520	-	-	2e-1	At3g54810	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.46	65.5	GmaAffx.54770.1.S1_at	At1g21520	-	-	1e-10	At5g59820	RHL41 (RESPONSIVE TO HIGH LIGHT 41)	O.I.	H.G.	S.X.	Please select
0.41	58.1	Gma.7519.1.A1_at	At1g21520	-	-	4e-1	At4g21366	ATP binding / protein tyrosine kinase	O.I.	H.G.	S.X.	Please select
0.41	58.1	GmaAffx.1841.1.A1_at	At1g21520	-	-	2e-1	At3g58780	SHP1 (SHATTERPROOF 1)	O.I.	H.G.	S.X.	Please select
0.40	57.1	Gma.2821.2.S1_a_at	At1g21520	PR-5 protein	-	2e-2	At4g11650	ATOSM34 (osmotin 34)	O.I.	H.G.	S.X.	Please select
0.39	54.5	GmaAffx.57898.1.S1_at	At1g21520	-	-	3e-1	At2g27030	CAM5 (CALMODULIN 5)	O.I.	H.G.	S.X.	Please select
0.39	54.5	GmaAffx.28803.1.S1_at	At1g21520	-	-	9e-7	At5g62150	peptidoglycan-binding LysM domain-containing protein	O.I.	H.G.	S.X.	Please select
0.38	53.3	Gma.7728.1.S1_at	At1g21520	-	-	8e-25	At3g21500	1-deoxy-D-xylulose-5-phosphate synthase	O.I.	H.G.	S.X.	Please select
0.37	51.7	GmaAffx.15262.1.S1_at	At1g21520	-	-	2e+0	At5g16480	tyrosine specific protein phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	GmaAffx.92557.1.S1_s_at	At1g21520	-	-	2e-6	At4g23270	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	Gma.17647.1.S1_at	At1g21520	-	-	2e+0	At5g44582	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	Gma.1082.1.S1_at	At1g21520	glutathione S-transferase GST 19	-	5e-1	At2g29420	ATGSTU7 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 7)	O.I.	H.G.	S.X.	Please select
0.36	50.8	Gma.2821.2.S1_at	At1g21520	PR-5 protein	-	2e-2	At4g11650	ATOSM34 (osmotin 34)	O.I.	H.G.	S.X.	Please select
0.35	48.6	Gma.4400.1.S1_at	At1g21520	WRKY53	-	4e-32	At5g13080	WRKY75	O.I.	H.G.	S.X.	Please select
0.35	48.6	GmaAffx.57967.1.S1_at	At1g21520	-	-	9e-1	At1g50470	-	O.I.	H.G.	S.X.	Please select
0.35	48.6	GmaAffx.69792.1.S1_s_at	At1g21520	-	-	3e-8	At5g64750	ABR1 (ABA REPRESSOR1)	O.I.	H.G.	S.X.	Please select
0.32	43.7	Gma.8425.1.S1_s_at	At1g21520	-	-	4e-3	At5g06900	CYP93D1	O.I.	H.G.	S.X.	Please select
0.31	42.2	Gma.11012.1.S1_at	At1g21520	-	-	2e-3	At1g15760	-	O.I.	H.G.	S.X.	Please select
0.27	35.7	GmaAffx.74889.1.S1_at	At1g21520	-	-	9e-12	At2g41690	AT-HSFB3	O.I.	H.G.	S.X.	Please select
0.26	33.9	GmaAffx.89999.1.S1_at	At1g21520	-	-	1e+0	At2g38700	MVD1 (MEVALONATE DIPHOSPHATE DECARBOXYLASE 1)	O.I.	H.G.	S.X.	Please select
0.26	33.9	GmaAffx.89999.1.S1_x_at	At1g21520	-	-	1e+0	At2g38700	MVD1 (MEVALONATE DIPHOSPHATE DECARBOXYLASE 1)	O.I.	H.G.	S.X.	Please select
0.25	32.6	GmaAffx.1338.1.S1_at	At1g21520	-	-	1e+0	At5g16453	-	O.I.	H.G.	S.X.	Please select
0.24	30.9	Gma.4332.1.S1_at	At1g21520	-	-	1e-4	At5g42510	disease resistance-responsive family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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