Co-expression analysis

Gene ID	Contig15752_s_at
Gene name
Homology with Arabidopsis	Similar to At1g61340: F-box family protein (HF=5e+0)
Module size	13 genes
NF	0.47
%ile	64.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	93.1	0.82	Contig15752_s_at	Contig15752	-	-	5e+0	At1g61340	F-box family protein	O.I.	H.G.	S.X.	Please select
0.70	86.0	0.88	Contig10720_at	Contig10720	-	-	1e-39	At1g22620	ATSAC1 (suppressor of actin 1)	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.86	Contig13241_at	Contig13241	-	-	2e+0	At2g06570	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.84	HVSMEc0005F13r2_at	HVSMEc0005F13r2	-	-	1e+0	At4g00950	MEE47 (maternal effect embryo arrest 47)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.85	Contig14778_at	Contig14778	-	-	7e-10	At4g17640	CKB2	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.89	Contig15855_at	Contig15855	-	-	2e+0	At1g48325	Expressed protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.85	Contig1518_at	Contig1518	-	-	3e-2	At3g05950	germin-like protein, putative	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.85	EBro02_SQ006_L04_x_at	EBro02_SQ006_L04	-	-	2e+1	At5g39010	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.88	Contig19922_at	Contig19922	-	-	2e+1	At5g15460	MUB2 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.89	Contig5004_at	Contig5004	-	-	9e-3	At3g63190	RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.85	Contig15753_at	Contig15753	-	-	5e-1	At3g16870	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.87	EBro02_SQ006_L04_at	EBro02_SQ006_L04	-	-	2e+1	At5g39010	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.86	Contig15871_at	Contig15871	-	-	1e-7	At1g51040	phosphatidylinositol 4-kinase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.7	98.3	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.7	97.7	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.6	97.7	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.0	97.2	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.9	97.1	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM419978	Awn_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.7	96.9	GSM440969	Control awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.4	96.6	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.2	96.3	GSM431568	pathogen isolates: Mock inoculated control - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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