Co-expression analysis

Gene ID	Contig15746_at
Gene name
Homology with Arabidopsis	Similar to At1g73890: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (HF=2e+0)
Module size	26 genes
NF	0.24
%ile	30.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.91	Contig15746_at	Contig15746	-	-	2e+0	At1g73890	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.45	59.3	0.94	Contig16959_at	Contig16959	-	-	9e-3	At3g48470	EMB2423 (EMBRYO DEFECTIVE 2423)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.94	Contig15384_at	Contig15384	-	-	1e-11	At5g55580	mitochondrial transcription termination factor family protein / mTERF family protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.93	Contig17639_at	Contig17639	-	-	9e-1	At1g12423	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.93	Contig12223_at	Contig12223	-	-	4e-1	At1g09500	cinnamyl-alcohol dehydrogenase family / CAD family	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.93	Contig18471_at	Contig18471	-	-	2e+0	At1g76590	zinc-binding family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	Contig8230_at	Contig8230	-	-	3e-24	At4g04860	DER2.2 (DERLIN-2.2)	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.94	HVSMEl0014E16r2_s_at	HVSMEl0014E16r2	-	-	2e+1	At4g03210	XTH9 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9)	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.94	Contig2342_at	Contig2342	-	-	3e-14	At5g04800	40S ribosomal protein S17 (RPS17D)	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.94	Contig12574_at	Contig12574	-	-	2e+0	At4g16100	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.95	Contig112_at	Contig112	-	-	2e-3	At5g23950	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.94	Contig21395_at	Contig21395	-	-	5e+0	At4g20410	GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN)	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.94	Contig14626_at	Contig14626	-	-	2e-1	At5g49170	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.94	Contig6298_at	Contig6298	-	-	2e-20	At1g80210	-	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.95	Contig14904_at	Contig14904	-	-	2e+0	At2g28330	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.94	Contig13551_at	Contig13551	-	-	5e-4	At1g22050	MUB6 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 6 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.95	Contig10115_at	Contig10115	-	-	7e-1	At5g48220	indole-3-glycerol phosphate synthase, putative	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.95	Contig20974_at	Contig20974	-	-	7e-6	At3g14650	CYP72A11	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.95	Contig192_at	Contig192	-	-	2e-30	At1g73230	nascent polypeptide-associated complex (NAC) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.95	Contig18517_at	Contig18517	-	-	1e-1	At2g18480	mannitol transporter, putative	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.93	Contig14972_s_at	Contig14972	-	-	4e+0	At1g58725	GDSL-motif lipase, putative	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.95	Contig1760_s_at	Contig1760	-	-	2e-9	At1g09340	CRB (CHLOROPLAST RNA BINDING)	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.94	Contig22270_at	Contig22270	-	-	5e-12	At4g08170	inositol 1,3,4-trisphosphate 5/6-kinase family protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.95	Contig11726_at	Contig11726	-	-	9e-10	At4g33140	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.95	Contig26573_at	Contig26573	-	-	7e-4	At1g31260	ZIP10 (ZINC TRANSPORTER 10 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.10	8.4	0.95	Contig10800_at	Contig10800	-	-	2e-53	At1g69960	PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	95.1	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.7	92.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.6	92.3	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.5	91.9	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.3	90.9	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
2.3	90.9	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
2.2	90.3	GSM372963	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.2	90.3	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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