Co-expression analysis

Gene ID	Contig15729_at
Gene name
Homology with Arabidopsis	Similar to At3g11280: myb family transcription factor (HF=3e-2)
Module size	6 genes
NF	0.74
%ile	93.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.94	Contig15729_at	Contig15729	-	-	3e-2	At3g11280	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.83	94.0	0.95	Contig7120_at	Contig7120	-	-	4e-18	At1g55880	pyridoxal-5'-phosphate-dependent enzyme, beta family protein	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.94	Contig7301_at	Contig7301	-	-	3e-1	At5g26070	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig327_s_at	Contig327	-	-	2e-2	At2g23310	ATRER1C1	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.96	Contig4455_at	Contig4455	-	-	5e-1	At5g05370	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig3480_at	Contig3480	-	-	4e-1	At5g16660	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.6	99.5	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
13.6	99.5	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.5	98.6	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
2.7	92.7	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.7	92.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.5	91.9	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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