Co-expression analysis

Gene ID	Contig15661_at
Gene name
Homology with Arabidopsis	Similar to At4g17530: ATRAB1C (HF=5e-17)
Module size	6 genes
NF	0.41
%ile	56.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.96	Contig15661_at	Contig15661	-	-	5e-17	At4g17530	ATRAB1C	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig24094_at	Contig24094	-	-	1e+0	At1g19115	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig14241_at	Contig14241	-	-	2e+0	At3g16250	NDF4 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.96	Contig15481_at	Contig15481	-	-	2e+0	At3g54170	ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig19575_at	Contig19575	-	-	5e-1	At4g15630	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.96	HX01C23w_s_at	HX01C23w	-	-	5e+0	At5g17165	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.0	97.9	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.7	97.7	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
4.9	97.1	GSM372995	genotype: 11542 - pathogen isolates: K1 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.7	96.9	GSM372991	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.6	96.8	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
4.4	96.6	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.4	96.6	GSM261038	Dicktoo-subzero-rep3	GSE10329	Low temperature stress in cv. Dicktoo
3.9	95.8	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.8	95.7	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
3.7	95.5	GSM398250	Martin_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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