Co-expression analysis

Gene ID	Contig15627_s_at
Gene name
Homology with Arabidopsis	Similar to At5g15802: unknown protein (HF=4e+0)
Module size	6 genes
NF	0.24
%ile	30.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.7	0.94	Contig15627_s_at	Contig15627	-	-	4e+0	At5g15802	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.95	HU03K03u_at	HU03K03u	-	-	5e+0	At5g58640	selenoprotein-related	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.95	Contig16402_at	Contig16402	-	-	2e+0	At2g06530	VPS2.1	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig23379_at	Contig23379	-	-	9e-2	At2g02020	proton-dependent oligopeptide transport (POT) family protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.95	Contig21025_at	Contig21025	-	-	7e-2	At2g16340	unknown protein	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.95	HVSMEk0017M22r2_at	HVSMEk0017M22r2	-	-	1e+0	At2g34440	AGL29 (AGAMOUS-LIKE 29)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.9	99.2	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.8	99.1	GSM71153	Barke stress and unstress replicate 4	GSE3170	Barley single feature polymorphisms and drought stress gene expression
9.7	99.0	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.5	99.0	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.4	98.8	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.9	98.7	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.8	98.6	GSM71151	Barke stress and unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
7.6	98.6	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.5	98.2	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.6	97.7	GSM146361	Golden Promise Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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