Co-expression analysis

Gene ID Contig15613_at
Gene name
Homology with ArabidopsisSimilar to At3g48860: unknown protein (HF=7e-16)
Module size 22 genes
NF 0.63
%ile 85.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8293.10.96Contig15613_atContig15613--7e-16At3g48860unknown proteinO.I.H.G.S.X.
0.8092.50.98Contig10380_x_atContig10380--4e-1At1g17880nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putativeO.I.H.G.S.X.
0.7991.40.98HA12A08u_s_atHA12A08u--5e-2At1g22780PFL (POINTED FIRST LEAVES)O.I.H.G.S.X.
0.7891.20.97Contig19629_atContig19629--1e-26At1g80900magnesium transporter CorA-like family protein (MGT1) (MRS2)O.I.H.G.S.X.
0.7689.80.97Contig6681_atContig6681--4e+0At5g63460SAP domain-containing proteinO.I.H.G.S.X.
0.7689.80.97HI05M04r_s_atHI05M04r--1e-23At2g3337060S ribosomal protein L23 (RPL23B)O.I.H.G.S.X.
0.7388.70.97HA03D07u_s_atHA03D07u--1e-1At5g15530BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2)O.I.H.G.S.X.
0.7287.40.97EBpi03_SQ003_A03_s_atEBpi03_SQ003_A03--6e-4At2g3337060S ribosomal protein L23 (RPL23B)O.I.H.G.S.X.
0.7187.10.97Contig3541_s_atContig3541--2e-5At2g36390SBE2.1 (starch branching enzyme 2.1)O.I.H.G.S.X.
0.7086.00.97Contig2975_s_atContig2975--2e+0At2g30860ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)O.I.H.G.S.X.
0.6885.10.98Contig11081_atContig11081--1e-26At5g47640NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2)O.I.H.G.S.X.
0.6784.70.97HU14M19u_s_atHU14M19u--3e+0At1g7406060S ribosomal protein L6 (RPL6B)O.I.H.G.S.X.
0.6784.70.98Contig19387_atContig19387--2e-1At3g30580unknown proteinO.I.H.G.S.X.
0.6480.90.97Contig25214_atContig25214--1e+0At3g26935zinc finger (DHHC type) family proteinO.I.H.G.S.X.
0.6380.30.96HVSMEb0010L13r2_atHVSMEb0010L13r2--1e+0At5g19970unknown proteinO.I.H.G.S.X.
0.6380.30.98EBem09_SQ001_B21_s_atEBem09_SQ001_B21--2e+0At5g36920unknown proteinO.I.H.G.S.X.
0.5774.90.97rbags18e07_s_atrbags18e07--4e-1At3g58170BS14A (BET1P/SFT1P-LIKE PROTEIN 14A)O.I.H.G.S.X.
0.5774.90.97Contig8701_atContig8701--3e-1At5g08290YLS8O.I.H.G.S.X.
0.4963.70.97Contig19492_atContig19492--5e-1At5g41340UBC4 (UBIQUITIN CONJUGATING ENZYME 4)O.I.H.G.S.X.
0.4153.90.98HM01F24T_s_atHM01F24T--4e-5At2g3337060S ribosomal protein L23 (RPL23B)O.I.H.G.S.X.
0.4153.90.97Contig16972_atContig16972--5e-10At5g64813LIP1 (Light Insensitive Period1)O.I.H.G.S.X.
0.3240.30.97Contig2345_s_atContig2345--3e-1At5g0480040S ribosomal protein S17 (RPS17D)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.799.4GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.498.1GSM261042before 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
6.097.9GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
5.497.5GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
4.296.3GSM398263HS41-1_0d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.096.0GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.494.8GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.194.1GSM398253Martin_1d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
2.993.4GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.591.9GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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