Co-expression analysis

Gene ID	Contig15613_at
Gene name
Homology with Arabidopsis	Similar to At3g48860: unknown protein (HF=7e-16)
Module size	22 genes
NF	0.63
%ile	85.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	93.1	0.96	Contig15613_at	Contig15613	-	-	7e-16	At3g48860	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.98	Contig10380_x_at	Contig10380	-	-	4e-1	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.79	91.4	0.98	HA12A08u_s_at	HA12A08u	-	-	5e-2	At1g22780	PFL (POINTED FIRST LEAVES)	O.I.	H.G.	S.X.	Please select
0.78	91.2	0.97	Contig19629_at	Contig19629	-	-	1e-26	At1g80900	magnesium transporter CorA-like family protein (MGT1) (MRS2)	O.I.	H.G.	S.X.	Please select
0.76	89.8	0.97	Contig6681_at	Contig6681	-	-	4e+0	At5g63460	SAP domain-containing protein	O.I.	H.G.	S.X.	Please select
0.76	89.8	0.97	HI05M04r_s_at	HI05M04r	-	-	1e-23	At2g33370	60S ribosomal protein L23 (RPL23B)	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.97	HA03D07u_s_at	HA03D07u	-	-	1e-1	At5g15530	BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.72	87.4	0.97	EBpi03_SQ003_A03_s_at	EBpi03_SQ003_A03	-	-	6e-4	At2g33370	60S ribosomal protein L23 (RPL23B)	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.97	Contig3541_s_at	Contig3541	-	-	2e-5	At2g36390	SBE2.1 (starch branching enzyme 2.1)	O.I.	H.G.	S.X.	Please select
0.70	86.0	0.97	Contig2975_s_at	Contig2975	-	-	2e+0	At2g30860	ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)	O.I.	H.G.	S.X.	Please select
0.68	85.1	0.98	Contig11081_at	Contig11081	-	-	1e-26	At5g47640	NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	HU14M19u_s_at	HU14M19u	-	-	3e+0	At1g74060	60S ribosomal protein L6 (RPL6B)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.98	Contig19387_at	Contig19387	-	-	2e-1	At3g30580	unknown protein	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.97	Contig25214_at	Contig25214	-	-	1e+0	At3g26935	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.96	HVSMEb0010L13r2_at	HVSMEb0010L13r2	-	-	1e+0	At5g19970	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.98	EBem09_SQ001_B21_s_at	EBem09_SQ001_B21	-	-	2e+0	At5g36920	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.97	rbags18e07_s_at	rbags18e07	-	-	4e-1	At3g58170	BS14A (BET1P/SFT1P-LIKE PROTEIN 14A)	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.97	Contig8701_at	Contig8701	-	-	3e-1	At5g08290	YLS8	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.97	Contig19492_at	Contig19492	-	-	5e-1	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.98	HM01F24T_s_at	HM01F24T	-	-	4e-5	At2g33370	60S ribosomal protein L23 (RPL23B)	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.97	Contig16972_at	Contig16972	-	-	5e-10	At5g64813	LIP1 (Light Insensitive Period1)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.97	Contig2345_s_at	Contig2345	-	-	3e-1	At5g04800	40S ribosomal protein S17 (RPS17D)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.7	99.4	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.4	98.1	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.0	97.9	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
5.4	97.5	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
4.2	96.3	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.0	96.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.4	94.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.1	94.1	GSM398253	Martin_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.9	93.4	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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