Co-expression analysis

Gene ID	Contig15566_at
Gene name
Homology with Arabidopsis	Similar to At5g33210: SRS8 (SHI-RELATED SEQUENCE 8) (HF=6e+0)
Module size	6 genes
NF	0.05
%ile	6.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.91	Contig15566_at	Contig15566	-	-	6e+0	At5g33210	SRS8 (SHI-RELATED SEQUENCE 8)	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.91	Contig1430_at	Contig1430	-	-	3e-54	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.93	Contig14657_at	Contig14657	-	-	2e-10	At1g50460	HKL1 (HEXOKINASE-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.92	Contig14323_at	Contig14323	-	-	3e+0	At5g26970	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	2.6	0.92	Contig8021_at	Contig8021	-	-	2e-1	At1g03110	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.02	1.8	0.91	Contig8797_at	Contig8797	-	-	1e-2	At4g09080	TOC75-IV	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.0	97.9	GSM372964	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.9	97.9	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.8	97.8	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.2	97.4	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
5.2	97.4	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.6	96.8	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.5	96.7	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.3	96.4	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.3	96.4	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.3	96.4	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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