Co-expression analysis

Gene ID Contig15533_at
Gene name
Homology with ArabidopsisSimilar to At4g10550: subtilase family protein (HF=4e-4)
Module size 24 genes
NF 0.57
%ile 79.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8293.10.88Contig15533_atContig15533--4e-4At4g10550subtilase family proteinO.I.H.G.S.X.
0.7991.40.92Contig11988_atContig11988--1e-1At3g18490aspartyl protease family proteinO.I.H.G.S.X.
0.6985.50.91Contig19360_atContig19360--2e-1At3g61590HWS (HAWAIIAN SKIRT)O.I.H.G.S.X.
0.6480.90.94HK04P18r_s_atHK04P18rCesA6 protein-2e+1Atcg00130-O.I.H.G.S.X.
0.6380.30.92Contig8411_atContig8411--2e-1At3g58630transcription factorO.I.H.G.S.X.
0.6178.70.92Contig4225_atContig4225--7e-4At5g54430universal stress protein (USP) family proteinO.I.H.G.S.X.
0.6178.70.93Contig9909_atContig9909--6e-3At3g11530vacuolar protein sorting 55 family protein / VPS55 family proteinO.I.H.G.S.X.
0.6077.30.93Contig327_s_atContig327--2e-2At2g23310ATRER1C1O.I.H.G.S.X.
0.6077.30.94Contig3480_atContig3480--4e-1At5g16660unknown proteinO.I.H.G.S.X.
0.5975.80.93Contig19292_atContig19292--1e-33At2g26300GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1)O.I.H.G.S.X.
0.5674.30.92Contig9908_atContig9908--2e-8At3g22270unknown proteinO.I.H.G.S.X.
0.5674.30.90Contig2503_atContig2503--9e-25At4g14550IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)O.I.H.G.S.X.
0.5674.30.94Contig4455_atContig4455--5e-1At5g05370ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putativeO.I.H.G.S.X.
0.5674.30.92Contig14585_atContig14585--2e+0At3g15250unknown proteinO.I.H.G.S.X.
0.5572.00.91Contig21214_atContig21214--2e-1At1g27240paired amphipathic helix repeat-containing proteinO.I.H.G.S.X.
0.5369.70.92Contig733_atContig733--8e-19At3g0484040S ribosomal protein S3A (RPS3aA)O.I.H.G.S.X.
0.4963.70.93Contig4453_atContig4453--3e-3At1g14700PAP3 (PURPLE ACID PHOSPHATASE 3)O.I.H.G.S.X.
0.4661.00.92Contig186_x_atContig186--9e-5At4g40030histone H3.2O.I.H.G.S.X.
0.4661.00.93Contig9923_atContig9923--4e+0At5g49050-O.I.H.G.S.X.
0.4458.90.93Contig6638_atContig6638--1e+0At1g21880LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR)O.I.H.G.S.X.
0.4356.40.94HVSMEf0014I15r2_x_atHVSMEf0014I15r2--2e+0At5g48000CYP708A2O.I.H.G.S.X.
0.4255.20.92Contig7585_atContig7585--2e+0At3g54490RPB5E (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, E)O.I.H.G.S.X.
0.4053.10.93Contig15729_atContig15729--3e-2At3g11280myb family transcription factorO.I.H.G.S.X.
0.3950.50.95Contig19314_atContig19314--2e+0At5g13780GCN5-related N-acetyltransferase, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.499.2GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
9.299.0GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.398.1GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.198.0GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.597.6GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.494.8GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO
3.394.6GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.093.8GSM261058Xantha b-12 Cotrol rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.993.4GSM160744drought control rep2GSE6990Barley drought stressLink to GEO
2.893.1GSM215728gibberellin treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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