Co-expression analysis

Gene ID	Contig15509_at
Gene name
Homology with Arabidopsis	Similar to At1g10522: unknown protein (HF=2e-3)
Module size	10 genes
NF	0.45
%ile	62.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	72.0	0.95	Contig15509_at	Contig15509	-	-	2e-3	At1g10522	unknown protein	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.96	Contig25651_at	Contig25651	-	-	5e-1	At2g41225	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.96	HV_CEa0014A19r2_at	HV_CEa0014A19r2	-	-	3e+0	At1g58160	jacalin lectin family protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.96	Contig13168_at	Contig13168	-	-	3e+0	At5g50130	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig25401_at	Contig25401	-	-	4e-3	At1g78710	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.96	Contig18328_at	Contig18328	-	-	5e-1	Atmg00110	-	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig6491_at	Contig6491	-	-	6e-1	At5g02230	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig8925_at	Contig8925	-	-	3e+0	At5g66060	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.96	Contig15411_at	Contig15411	-	-	2e-4	At5g49890	CLC-C (CHLORIDE CHANNEL C)	O.I.	H.G.	S.X.	Please select
0.28	35.5	0.96	Contig20549_at	Contig20549	-	-	2e-27	At2g39480	PGP6 (P-GLYCOPROTEIN 6)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
23.6	99.8	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
16.7	99.6	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM160464	drought control rep1	GSE6990	Barley drought stress
3.8	95.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.8	95.7	GSM440963	Control palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.5	95.1	GSM419972	Lemma_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.5	95.1	GSM440957	Control lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.4	94.8	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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