Co-expression analysis

Gene ID	Contig15506_at
Gene name
Homology with Arabidopsis	Similar to At3g28420: unknown protein (HF=6e+0)
Module size	12 genes
NF	0.21
%ile	26.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.58	74.9	0.86	Contig15506_at	Contig15506	-	-	6e+0	At3g28420	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	59.3	0.89	Contig11891_at	Contig11891	-	-	1e-7	At1g33230	-	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.93	HU05P03u_s_at	HU05P03u	-	-	3e+0	At5g03930	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.92	Contig13590_at	Contig13590	-	-	2e-2	At2g31070	TCP10 (TCP DOMAIN PROTEIN 10)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.92	Contig840_s_at	Contig840	vacuolar proton-inorganic pyrophosphatase	-	3e-26	At1g15690	AVP1	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.92	Contig11815_at	Contig11815	-	-	2e-3	At5g19370	rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.93	Contig12602_at	Contig12602	-	-	4e-6	At5g52820	WD-40 repeat family protein / notchless protein, putative	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.90	Contig6483_at	Contig6483	-	-	3e-1	At2g23920	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.93	Contig9897_at	Contig9897	-	-	6e+0	At4g14690	ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.90	HF21J01r_at	HF21J01r	-	-	3e-1	At2g45060	-	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.91	Contig24681_at	Contig24681	-	-	1e+0	At3g15020	malate dehydrogenase (NAD), mitochondrial, putative	O.I.	H.G.	S.X.	Please select
0.08	6.5	0.91	Contig16530_at	Contig16530	-	-	1e+0	At4g26470	calcium ion binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.7	98.9	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.7	96.9	GSM372982	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.1	96.2	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds
4.0	96.0	GSM238437	Embryo 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM372964	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.1	94.1	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.1	94.1	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM372987	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.7	92.7	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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