Co-expression analysis

Gene ID	Contig15504_at
Gene name
Homology with Arabidopsis	Similar to At1g14670: endomembrane protein 70, putative (HF=2e-14)
Module size	8 genes
NF	0.62
%ile	84.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	0.95	Contig15504_at	Contig15504	-	-	2e-14	At1g14670	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig13549_at	Contig13549	-	-	2e+0	At3g20230	50S ribosomal protein L18 family	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.96	Contig7675_at	Contig7675	-	-	2e+0	At4g19840	ATPP2-A1	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.95	Contig8793_at	Contig8793	-	-	1e-1	At2g36261	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.96	Contig8623_s_at	Contig8623	-	-	2e+0	At4g00960	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.96	Contig15558_at	Contig15558	-	-	1e+0	At1g12080	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.96	Contig23413_at	Contig23413	-	-	2e-2	At5g49400	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig18583_at	Contig18583	beta-ketoacyl-ACP synthase I	-	2e-51	At5g46290	KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.6	97.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.5	97.6	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.5	95.1	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.2	94.3	GSM311254	hsp5_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
2.8	93.1	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.7	92.7	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.4	91.4	GSM311257	hsp5_without_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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