Co-expression analysis

Gene ID Contig15475_at
Gene name
Homology with ArabidopsisSimilar to At4g20860: FAD-binding domain-containing protein (HF=4e-2)
Module size 6 genes
NF 0.55
%ile 76.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.86Contig15475_atContig15475--4e-2At4g20860FAD-binding domain-containing proteinO.I.H.G.S.X.
0.6077.30.89Contig18135_atContig18135--2e+0At5g67300MYBR1 (MYB DOMAIN PROTEIN R1)O.I.H.G.S.X.
0.6077.30.89Contig13383_atContig13383--1e-8At2g48010RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3)O.I.H.G.S.X.
0.5774.90.87Contig10688_atContig10688--8e+0At5g65430GRF8 (GENERAL REGULATORY FACTOR 8)O.I.H.G.S.X.
0.4458.90.92Contig10689_atContig10689--3e-10At2g40360transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.2427.20.85HX05P09r_atHX05P09r--9e-1At5g60350unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.699.5GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
12.899.4GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.198.7GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.598.6GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.398.5GSM146377Maythorpe shoot Control, biological rep 3GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
7.298.5GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.098.4GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.998.3GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.798.3GSM146376Maythorpe shoot Control, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
6.498.1GSM146379Maythorpe shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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