Co-expression analysis

Gene ID	Contig15475_at
Gene name
Homology with Arabidopsis	Similar to At4g20860: FAD-binding domain-containing protein (HF=4e-2)
Module size	6 genes
NF	0.55
%ile	76.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.86	Contig15475_at	Contig15475	-	-	4e-2	At4g20860	FAD-binding domain-containing protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.89	Contig18135_at	Contig18135	-	-	2e+0	At5g67300	MYBR1 (MYB DOMAIN PROTEIN R1)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.89	Contig13383_at	Contig13383	-	-	1e-8	At2g48010	RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3)	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.87	Contig10688_at	Contig10688	-	-	8e+0	At5g65430	GRF8 (GENERAL REGULATORY FACTOR 8)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.92	Contig10689_at	Contig10689	-	-	3e-10	At2g40360	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.85	HX05P09r_at	HX05P09r	-	-	9e-1	At5g60350	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.6	99.5	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
12.8	99.4	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.1	98.7	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.5	98.6	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.3	98.5	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.2	98.5	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.0	98.4	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.9	98.3	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.7	98.3	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.4	98.1	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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