Co-expression analysis

Gene ID	Contig15463_at
Gene name
Homology with Arabidopsis	Similar to At5g11930: glutaredoxin family protein (HF=5e+0)
Module size	6 genes
NF	0.71
%ile	92.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	0.97	Contig15463_at	Contig15463	-	-	5e+0	At5g11930	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.97	Contig11673_at	Contig11673	-	-	7e-8	At2g35720	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig1760_s_at	Contig1760	-	-	2e-9	At1g09340	CRB (CHLOROPLAST RNA BINDING)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig11731_at	Contig11731	-	-	2e-10	At3g02450	cell division protein ftsH, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig26395_at	Contig26395	-	-	5e+0	At5g07460	PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.97	Contig841_x_at	Contig841	-	-	1e-35	At2g34420	LHB1B2	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.1	98.7	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.1	98.7	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
6.1	98.0	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM398276	Moroc9-75_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.9	97.9	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.1	96.2	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM398278	Moroc9-75_1d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.9	95.8	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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