Co-expression analysis

Gene ID	Contig15427_at
Gene name
Homology with Arabidopsis	Similar to At4g29110: unknown protein (HF=7e+0)
Module size	10 genes
NF	0.62
%ile	84.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.3	0.86	Contig15427_at	Contig15427	-	-	7e+0	At4g29110	unknown protein	O.I.	H.G.	S.X.	Please select
0.89	95.4	0.90	HA07k01r_at	HA07k01r	-	-	1e+0	At3g48640	unknown protein	O.I.	H.G.	S.X.	Please select
0.70	86.0	0.88	Contig2339_at	Contig2339	-	-	5e-12	At4g15000	60S ribosomal protein L27 (RPL27C)	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.85	Contig9561_at	Contig9561	-	-	1e+1	At4g15780	ATVAMP724	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.87	HU14G08u_s_at	HU14G08u	-	-	3e-1	At5g38400	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.87	HX05P09r_at	HX05P09r	-	-	9e-1	At5g60350	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.87	Contig17982_at	Contig17982	-	-	2e+1	At5g05340	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.87	Contig15728_at	Contig15728	-	-	2e+0	At3g21215	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.87	Contig19065_at	Contig19065	-	-	1e+0	At5g58787	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.87	Contig12675_s_at	Contig12675	-	-	1e+0	At4g28150	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
33.7	99.9	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
14.4	99.5	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
12.7	99.4	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.2	99.0	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.0	93.8	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.7	92.7	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.7	92.7	GSM373003	genotype: 11542 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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