Co-expression analysis

Gene ID	Contig15411_at
Gene name
Homology with Arabidopsis	Similar to At5g49890: CLC-C (CHLORIDE CHANNEL C) (HF=2e-4)
Module size	7 genes
NF	0.49
%ile	68.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	61.0	0.96	Contig15411_at	Contig15411	-	-	2e-4	At5g49890	CLC-C (CHLORIDE CHANNEL C)	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.96	Contig25651_at	Contig25651	-	-	5e-1	At2g41225	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.96	Contig13036_at	Contig13036	-	-	6e-1	At3g57000	nucleolar essential protein-related	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.97	Contig13168_at	Contig13168	-	-	3e+0	At5g50130	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig6491_at	Contig6491	-	-	6e-1	At5g02230	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig13436_at	Contig13436	-	-	3e-1	At3g23200	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	HV_CEa0014A19r2_at	HV_CEa0014A19r2	-	-	3e+0	At1g58160	jacalin lectin family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
33.8	99.9	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
22.9	99.8	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
2.9	93.4	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
2.7	92.7	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.6	92.3	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
2.5	91.9	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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