Co-expression analysis

Gene ID	Contig15403_at
Gene name
Homology with Arabidopsis	Similar to At3g13065: SRF4 (STRUBBELIG-RECEPTOR FAMILY 4) (HF=6e-7)
Module size	6 genes
NF	0.71
%ile	91.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.98	Contig15403_at	Contig15403	-	-	6e-7	At3g13065	SRF4 (STRUBBELIG-RECEPTOR FAMILY 4)	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.98	Contig9716_at	Contig9716	-	-	3e-6	At5g46800	BOU (A BOUT DE SOUFFLE)	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.99	Contig6571_at	Contig6571	-	-	6e-10	At3g55520	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.98	Contig17600_at	Contig17600	-	-	2e-12	At3g54090	pfkB-type carbohydrate kinase family protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.98	Contig18801_at	Contig18801	-	-	2e+0	At3g63233	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.98	EBro01_SQ003_E14_s_at	EBro01_SQ003_E14	-	-	1e+1	At3g19150	KRP6 (KIP-RELATED PROTEIN 6)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.6	99.6	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
14.8	99.5	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
10.1	99.1	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
7.5	98.6	GSM146361	Golden Promise Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.4	98.5	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.3	98.5	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.4	98.1	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.3	98.1	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.2	98.0	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.1	98.0	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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