Co-expression analysis

Gene ID	Contig15382_at
Gene name
Homology with Arabidopsis	Similar to Atmg00550: - (HF=7e+0)
Module size	6 genes
NF	0.49
%ile	68.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	0.96	Contig15382_at	Contig15382	-	-	7e+0	Atmg00550	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig26573_at	Contig26573	-	-	7e-4	At1g31260	ZIP10 (ZINC TRANSPORTER 10 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig12778_at	Contig12778	-	-	2e-3	At1g76730	5-formyltetrahydrofolate cyclo-ligase family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig22652_at	Contig22652	-	-	4e-1	At2g19050	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig14258_at	Contig14258	-	-	5e+0	At1g30800	-	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.96	Contig12107_at	Contig12107	-	-	2e-10	At5g22000	RHF2A (RING-H2 GROUP F2A)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.5	98.6	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.0	97.9	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
4.5	96.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.4	94.8	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.3	94.6	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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