Co-expression analysis

Gene ID Contig15375_at
Gene name
Homology with ArabidopsisSimilar to At5g49410: unknown protein (HF=2e+0)
Module size 9 genes
NF 0.27
%ile 35.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.94Contig15375_atContig15375--2e+0At5g49410unknown proteinO.I.H.G.S.X.
0.4661.00.96Contig7506_atContig7506--2e-39At3g23310protein kinase, putativeO.I.H.G.S.X.
0.3647.10.96Contig3042_atContig3042--2e-12At5g25370PLDALPHA3 (PHOSPHLIPASE D ALPHA 3)O.I.H.G.S.X.
0.3545.10.95Contig17096_atContig17096--7e-2At5g24430calcium-dependent protein kinase, putative / CDPK, putativeO.I.H.G.S.X.
0.2732.10.94Contig6947_atContig6947--5e-14At5g4562026S proteasome regulatory subunit, putative (RPN9)O.I.H.G.S.X.
0.2630.40.95Contig13711_atContig13711--2e+0At3g22942AGG2 (G-PROTEIN GAMMA SUBUNIT 2)O.I.H.G.S.X.
0.2630.40.95HA03B13u_s_atHA03B13u--8e-4At5g67560ATARLA1D (ADP-ribosylation factor-like A1D)O.I.H.G.S.X.
0.2122.60.96HVSMEl0020O13r2_s_atHVSMEl0020O13r2--9e+0At5g17150-O.I.H.G.S.X.
0.1210.40.95HVSMEc0015C10r2_atHVSMEc0015C10r2--1e-9At5g06950AHBP-1BO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
41.899.9GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.598.8GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
7.498.5GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
5.697.7GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
5.497.5GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
3.995.8GSM431548pathogen isolates: Mock - rep3GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.695.3GSM431546pathogen isolates: Mock - rep1GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.695.3GSM431551pathogen isolates: Polymyxa graminis - rep3GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.595.1GSM431547pathogen isolates: Mock - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.494.8GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage