Co-expression analysis

Gene ID	Contig15369_at
Gene name
Homology with Arabidopsis	Similar to At3g17609: HYH (HY5-HOMOLOG) (HF=1e-4)
Module size	16 genes
NF	0.28
%ile	37.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	0.92	Contig15369_at	Contig15369	-	-	1e-4	At3g17609	HYH (HY5-HOMOLOG)	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.92	Contig8654_at	Contig8654	-	-	3e-90	At5g18620	CHR17 (CHROMATIN REMODELING FACTOR17)	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.95	Contig1673_s_at	Contig1673	-	-	3e-2	At4g18800	ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.94	HD04E24u_at	HD04E24u	-	-	1e+0	At5g13790	AGL15 (AGAMOUS-LIKE 15)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.93	Contig8626_at	Contig8626	-	-	3e+0	At3g05935	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.93	Contig15965_at	Contig15965	-	-	1e+0	At3g11780	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.93	Contig17478_at	Contig17478	-	-	2e+0	At2g17695	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.94	HS03H22u_at	HS03H22u	-	-	3e-1	At4g32900	aminoacyl-tRNA hydrolase	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.95	Contig11134_at	Contig11134	-	-	5e-1	At5g49210	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.95	Contig15529_at	Contig15529	-	-	7e-19	At5g39900	GTP binding / GTPase/ translation elongation factor	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.95	HVSMEa0015B19r2_x_at	HVSMEa0015B19r2	-	-	4e+0	At5g04070	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.95	Contig12368_at	Contig12368	-	-	1e-1	At4g34330	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.94	Contig832_s_at	Contig832	-	-	9e-6	At5g66570	PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1)	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.94	Contig1180_at	Contig1180	-	-	4e-20	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.94	EBem10_SQ003_I08_s_at	EBem10_SQ003_I08	-	-	2e+0	At1g07370	PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN)	O.I.	H.G.	S.X.	Please select
0.15	14.1	0.95	HU09I17u_at	HU09I17u	-	-	7e-1	At1g64107	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.5	96.7	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.4	96.6	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0	96.0	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.7	95.5	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.2	94.3	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.2	94.3	GSM261058	Xantha b-12 Cotrol rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.1	94.1	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8	93.1	GSM238423	Endosperm 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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