Co-expression analysis

Gene ID	Contig15213_at
Gene name
Homology with Arabidopsis	Similar to At4g27745: - (HF=1e-1)
Module size	6 genes
NF	0.51
%ile	71.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.95	Contig15213_at	Contig15213	-	-	1e-1	At4g27745	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig12944_at	Contig12944	-	-	2e-3	At1g44970	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig10621_at	Contig10621	-	-	4e-1	At1g14315	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig12308_at	Contig12308	-	-	1e-5	At3g23530	cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.95	Contig5857_at	Contig5857	-	-	2e-1	At1g02965	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.95	Contig1302_at	Contig1302	-	-	1e-5	At1g20580	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
22.3	99.8	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
15.4	99.6	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.4	98.1	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.0	97.2	GSM419972	Lemma_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.0	97.2	GSM440957	Control lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.5	95.1	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.2	94.3	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.2	94.3	GSM440963	Control palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.7	92.7	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.7	92.7	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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