Co-expression analysis

Gene ID Contig15156_at
Gene name
Homology with ArabidopsisSimilar to At1g48210: serine/threonine protein kinase, putative (HF=2e+0)
Module size 6 genes
NF 0.62
%ile 84.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7388.70.97Contig15156_atContig15156--2e+0At1g48210serine/threonine protein kinase, putativeO.I.H.G.S.X.
0.6784.70.97Contig125_atContig125--2e+0At4g25720QC (GLUTAMINYL CYCLASE)O.I.H.G.S.X.
0.6077.30.97Contig14753_atContig14753--4e-7At5g38060unknown proteinO.I.H.G.S.X.
0.5066.90.97Contig3633_s_atContig3633--7e-1At3g13480unknown proteinO.I.H.G.S.X.
0.4458.90.96Contig8742_atContig8742--1e-6At3g61600ATPOB1O.I.H.G.S.X.
0.4458.90.97Contig9136_atContig9136--1e-5At3g51140-O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5572.00.95Contig11545_atContig11545--6e-3At3g17210HS1 (HEAT STABLE PROTEIN 1)O.I.H.G.S.X.
0.4661.00.96Contig8279_atContig8279--7e-18At3g23990HSP60 (HEAT SHOCK PROTEIN 60)O.I.H.G.S.X.
0.4661.00.96Contig7557_s_atContig7557--6e-18At5g17530phosphoglucosamine mutase family proteinO.I.H.G.S.X.
0.4356.40.96Contig10036_atContig10036--2e+0At1g30060COP1-interacting protein-relatedO.I.H.G.S.X.
0.4053.10.94Contig24709_atContig24709--1e+0At5g26840unknown proteinO.I.H.G.S.X.
0.4053.10.95Contig7584_atContig7584--2e+0At1g23660unknown proteinO.I.H.G.S.X.
0.4053.10.96Contig14472_atContig14472--4e-8At1g28440HSL1 (HAESA-Like 1)O.I.H.G.S.X.
0.3647.10.95Contig15025_atContig15025--2e+0At5g48655zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3647.10.96Contig7322_atContig7322--2e-3At3g27310PUX1 (PLANT UBX DOMAIN-CONTAINING PROTEIN 1)O.I.H.G.S.X.
0.3545.10.96Contig15157_atContig15157--1e+0At3g20370meprin and TRAF homology domain-containing protein / MATH domain-containing proteinO.I.H.G.S.X.
0.3342.60.93HB15N21r_s_atHB15N21r--4e+0At4g38520protein phosphatase 2C family protein / PP2C family proteinO.I.H.G.S.X.
0.3342.60.93Contig1243_atContig1243--1e-1At1g7406060S ribosomal protein L6 (RPL6B)O.I.H.G.S.X.
0.3342.60.95Contig1185_atContig1185--8e-2At1g62540FMO GS-OX2 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 2)O.I.H.G.S.X.
0.3342.60.96Contig17036_atContig17036--4e-7At3g27720zinc finger protein-relatedO.I.H.G.S.X.
0.3342.60.96Contig5466_atContig5466--3e-4At5g60460sec61beta family proteinO.I.H.G.S.X.
0.3342.60.96Contig871_s_atContig871--1e+0At4g37530peroxidase, putativeO.I.H.G.S.X.
0.3342.60.96Contig4290_atContig4290--4e-15At4g32390phosphate translocator-relatedO.I.H.G.S.X.
0.3138.60.93Contig9086_atContig9086--5e-18At3g48780SPT1 (SERINE PALMITOYLTRANSFERASE 1)O.I.H.G.S.X.
0.3138.60.95Contig14563_atContig14563--2e+0At5g60680unknown proteinO.I.H.G.S.X.
0.3138.60.95Contig6604_atContig6604--1e-4At1g18100E12A11O.I.H.G.S.X.
0.3138.60.97Contig5664_atContig5664--1e-2At1g25450KCS5 (3-KETOACYL-COA SYNTHASE 5)O.I.H.G.S.X.
0.2935.50.95Contig4806_atContig4806--4e-1At4g08685SAH7O.I.H.G.S.X.
0.2935.50.93rbaal18m18_atrbaal18m18--8e-11At5g26240CLC-D (CHLORIDE CHANNEL D)O.I.H.G.S.X.
0.2935.50.95Contig1143_atContig1143--2e-15At1g07790HTB1O.I.H.G.S.X.
0.2935.50.95Contig8033_atContig8033--3e-10At3g61050NTMC2T4O.I.H.G.S.X.
0.2935.50.96Contig16867_atContig16867--7e-9At3g02690integral membrane family proteinO.I.H.G.S.X.
0.2835.50.95Contig13811_atContig13811--4e-2At2g20630protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.2835.50.95Contig16307_atContig16307--9e-2At5g38450CYP735A1O.I.H.G.S.X.
0.2732.10.95Contig21521_atContig21521--1e+0At1g72210basic helix-loop-helix (bHLH) family protein (bHLH096)O.I.H.G.S.X.
0.2732.10.95Contig10104_atContig10104--1e-16At5g38110ASF1B (ANTI- SILENCING FUNCTION 1B)O.I.H.G.S.X.
0.2732.10.96Contig9798_atContig9798--7e-1At5g59150ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D)O.I.H.G.S.X.
0.2630.40.94Contig23462_atContig23462--5e+0At5g43770proline-rich family proteinO.I.H.G.S.X.
0.2630.40.95Contig10848_atContig10848--9e-9At3g43700ATBPM6 (BTB-POZ and MATH domain 6)O.I.H.G.S.X.
0.2528.90.94HVSMEa0012A19r2_x_atHVSMEa0012A19r2--1e+1At2g07505unknown proteinO.I.H.G.S.X.
0.2528.90.95HU02E04u_s_atHU02E04u--8e-5At3g27720zinc finger protein-relatedO.I.H.G.S.X.
0.2528.90.95Contig13446_atContig13446--1e-2At5g02070protein kinase-relatedO.I.H.G.S.X.
0.2528.90.96HU02A01u_s_atHU02A01u--4e+0At5g60330unknown proteinO.I.H.G.S.X.
0.2528.90.96Contig9520_atContig9520--4e-4At5g46160ribosomal protein L14 family protein / huellenlos paralog (HLP)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.097.9GSM215729gibberellin plus Yariv-reagent treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
5.197.3GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.897.0GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
4.897.0GSM215728gibberellin treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
4.696.8GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.396.4GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.595.1GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.394.6GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.194.1GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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